View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10667_high_10 (Length: 235)
Name: NF10667_high_10
Description: NF10667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10667_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 10 - 220
Target Start/End: Original strand, 34787583 - 34787793
Alignment:
| Q |
10 |
agaagcagagatacgtcctccaaagcagaaaatcaccgattcaaccgaactcggcgagtatcgtctccggaaacgaaaggaattcgaggatttaattcgg |
109 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34787583 |
agaagctgagatacgtcctccaaagcagaaaatcaccgattcaaccgaactcggcgagtatcgtctccggaaacgaaaggaattcgaggatttaattcgg |
34787682 |
T |
|
| Q |
110 |
cgagtgaggtggaatgttagtgtttggattaagtatgcacagtgggaagagtcgcagaaggattttacacgtgcacgttcggtttgggaacgagcattgg |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34787683 |
cgagtgaggtggaatgttagtgtttggattaagtatgcacagtgggaagagtcgcagaaggattttacacgtgcacgttcggtttgggaacgagcattgg |
34787782 |
T |
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| Q |
210 |
aagttgattat |
220 |
Q |
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||||||||||| |
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| T |
34787783 |
aagttgattat |
34787793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 10 - 220
Target Start/End: Complemental strand, 2293614 - 2293404
Alignment:
| Q |
10 |
agaagcagagatacgtcctccaaagcagaaaatcaccgattcaaccgaactcggcgagtatcgtctccggaaacgaaaggaattcgaggatttaattcgg |
109 |
Q |
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|||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |
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| T |
2293614 |
agaagctgagatccgtcctccaaagcagaaaatcaccgattcaacagaactcggcgagtatcgtctccggaaaagaaaggaattcgaggatttaatccgg |
2293515 |
T |
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| Q |
110 |
cgagtgaggtggaatgttagtgtttggattaagtatgcacagtgggaagagtcgcagaaggattttacacgtgcacgttcggtttgggaacgagcattgg |
209 |
Q |
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|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2293514 |
agagttcggtggaatgtcagtgtttggattaagtatgcacagtgggaagagtcgcagaaagattttacacgtgcacgttcggtttgggaacgagcattgg |
2293415 |
T |
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| Q |
210 |
aagttgattat |
220 |
Q |
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||||||||||| |
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| T |
2293414 |
aagttgattat |
2293404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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