View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10667_high_2 (Length: 323)
Name: NF10667_high_2
Description: NF10667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10667_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 5860113 - 5860314
Alignment:
| Q |
1 |
attaatcaggtggtccatattttttgcagttttcttttgaagttggtattctcaaagtttttggaaatctagagccaaggttgagggaagagctaaagaa |
100 |
Q |
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| T |
5860113 |
attaatcaggtggtccatattttttgcagttttcttttgaagttggtattctcaaagtttttggaaatctagagccgaggttgagggaagagctaaagaa |
5860212 |
T |
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| Q |
101 |
gaattattggattgttgacaatggttacaattcttttccaactcaaattcctggtacacaatacaaaaaggcactcttggtaagtactatattaattcaa |
200 |
Q |
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| T |
5860213 |
gaattattggattgttgacaatggttacaattcttttccaactcaaattcctggtacacaatacaaaaaggcactcttggtaagtactatattaattcaa |
5860312 |
T |
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| Q |
201 |
ga |
202 |
Q |
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|| |
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| T |
5860313 |
ga |
5860314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 257 - 304
Target Start/End: Original strand, 5860369 - 5860416
Alignment:
| Q |
257 |
gaaggcaagagagaaacttggaagtattttgaaggaaataattagtga |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5860369 |
gaaggcaagagagaaacttggaagtattttgaaggaaataattagtga |
5860416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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