View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10667_high_3 (Length: 292)

Name: NF10667_high_3
Description: NF10667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10667_high_3
NF10667_high_3
[»] chr1 (1 HSPs)
chr1 (66-274)||(27302878-27303086)
[»] chr7 (2 HSPs)
chr7 (66-274)||(41679930-41680138)
chr7 (66-274)||(17361756-17361964)
[»] chr2 (1 HSPs)
chr2 (66-274)||(26222022-26222230)
[»] chr5 (2 HSPs)
chr5 (66-274)||(19544393-19544601)
chr5 (66-274)||(40689152-40689360)
[»] chr6 (2 HSPs)
chr6 (66-274)||(24499243-24499451)
chr6 (135-180)||(18603991-18604036)
[»] chr8 (2 HSPs)
chr8 (115-274)||(18560374-18560533)
chr8 (1-56)||(29274857-29274912)


Alignment Details
Target: chr1 (Bit Score: 176; Significance: 7e-95; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 66 - 274
Target Start/End: Complemental strand, 27303086 - 27302878
Alignment:
Q  66 tcatacgtgcggcgctatgactttcgcgnnnnnnngacatatcctagtatgtttgtctattactatatgtagctaattcattgtttaagttgactattaa 165  Q
    ||||||||||||||| ||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27303086 tcatacgtgcggcgccatgactttcgcgaggaaaagacatatcctagtatgtttgtctattactatatgtagctaattcattgtttaagttgactattaa 27302987  T
Q  166 gttatttgattcataattatactttttgttctagactcttgaggctggtaagcctatcggccggggtccaatgtgggatatgacccataaaagggcagat 265  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  27302986 gttatttgattcataattatactttttgttctagactcttgaggctggtaagcctgtcggccggggtccaatgtgggatatgacccacaaaagggcagat 27302887  T
Q  266 gggaagtat 274  Q
    |||||||||    
T  27302886 gggaagtat 27302878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 66 - 274
Target Start/End: Complemental strand, 41680138 - 41679930
Alignment:
Q  66 tcatacgtgcggcgctatgactttcgcgnnnnnnngacatatcctagtatgtttgtctattactatatgtagctaattcattgtttaagttgactattaa 165  Q
    |||||| |||||||| ||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41680138 tcatacatgcggcgccatgactttcgcgagaaaaagacatatcctagtatgtttgtctattactatatgtagctaattcattgtttaagttgactattaa 41680039  T
Q  166 gttatttgattcataattatactttttgttctagactcttgaggctggtaagcctatcggccggggtccaatgtgggatatgacccataaaagggcagat 265  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  41680038 gttatttgattcataattatactttttgttctagactcttgaggctggtaagcctgtcagccggggtccaatgtgggatatgacccataaaagggcagat 41679939  T
Q  266 gggaagtat 274  Q
    |||||||||    
T  41679938 gggaagtat 41679930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 66 - 274
Target Start/End: Complemental strand, 17361964 - 17361756
Alignment:
Q  66 tcatacgtgcggcgctatgactttcgcgnnnnnnngacatatcctagtatgtttgtctattactatatgtagctaattcattgtttaagttgactattaa 165  Q
    ||||||||||||||| ||||||||||||       |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||    
T  17361964 tcatacgtgcggcgccatgactttcgcgagaaaaagacatatcctagtatgtttgtctattactatatgtaactaattctttgtttaagtttactattaa 17361865  T
Q  166 gttatttgattcataattatactttttgttctagactcttgaggctggtaagcctatcggccggggtccaatgtgggatatgacccataaaagggcagat 265  Q
    ||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  17361864 gttatttgattcataattatactttttattatagactcttgaggctggtaagcctgtcggccggggtccaatgtgggatatgacccacaaaagggcagat 17361765  T
Q  266 gggaagtat 274  Q
    |||||||||    
T  17361764 gggaagtat 17361756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 66 - 274
Target Start/End: Original strand, 26222022 - 26222230
Alignment:
Q  66 tcatacgtgcggcgctatgactttcgcgnnnnnnngacatatcctagtatgtttgtctattactatatgtagctaattcattgtttaagttgactattaa 165  Q
    ||||||||||||||| ||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26222022 tcatacgtgcggcgccatgactttcgcgagtaaaagacatatcctagtatgtttgtctattactatatgtagctaattcattgtttaagttgactattaa 26222121  T
Q  166 gttatttgattcataattatactttttgttctagactcttgaggctggtaagcctatcggccggggtccaatgtgggatatgacccataaaagggcagat 265  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  26222122 gttatctgattcataattatactttttgttctagactcttgaggctggtaagcctgtcggccggggtccaatgtgggatatgacccacaaaagggcagat 26222221  T
Q  266 gggaagtat 274  Q
    |||||||||    
T  26222222 gggaagtat 26222230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 66 - 274
Target Start/End: Original strand, 19544393 - 19544601
Alignment:
Q  66 tcatacgtgcggcgctatgactttcgcgnnnnnnngacatatcctagtatgtttgtctattactatatgtagctaattcattgtttaagttgactattaa 165  Q
    ||||||||||||| | ||||||||||||       ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  19544393 tcatacgtgcggcaccatgactttcgcgaggaaaagacatatcctagtatgtttgtttattactatatgtagctaattcattgtttaagttgactattaa 19544492  T
Q  166 gttatttgattcataattatactttttgttctagactcttgaggctggtaagcctatcggccggggtccaatgtgggatatgacccataaaagggcagat 265  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  19544493 gttatttgattcataattatactttttgttctagactcttgaggctggtaagcctgtcggccggggtccaatgtgggatatgacccacaaaagggcagat 19544592  T
Q  266 gggaagtat 274  Q
    |||||||||    
T  19544593 gggaagtat 19544601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 66 - 274
Target Start/End: Original strand, 40689152 - 40689360
Alignment:
Q  66 tcatacgtgcggcgctatgactttcgcgnnnnnnngacatatcctagtatgtttgtctattactatatgtagctaattcattgtttaagttgactattaa 165  Q
    ||||||||||||||| ||||||||| ||        ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40689152 tcatacgtgcggcgccatgactttctcgaggaaaaaacatatcctagtaagtttgtctattactatatgtagctaattcattgtttaagttgactattaa 40689251  T
Q  166 gttatttgattcataattatactttttgttctagactcttgaggctggtaagcctatcggccggggtccaatgtgggatatgacccataaaagggcagat 265  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||||| ||||    
T  40689252 gttatttgattcataattatactttttgttctagactcttgaggctggtaagcctatcggctagggtccaatgtgggatatgacccacaaaagggtagat 40689351  T
Q  266 gggaagtat 274  Q
    |||||||||    
T  40689352 gggaagtat 40689360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 156; Significance: 6e-83; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 66 - 274
Target Start/End: Complemental strand, 24499451 - 24499243
Alignment:
Q  66 tcatacgtgcggcgctatgactttcgcgnnnnnnngacatatcctagtatgtttgtctattactatatgtagctaattcattgtttaagttgactattaa 165  Q
    ||||||||||||||| ||||||||||||       |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  24499451 tcatacgtgcggcgccatgactttcgcgagaaaaagacatatcttagtatgtttgtctattactatatgtaactaattcattgtttaagttgactattaa 24499352  T
Q  166 gttatttgattcataattatactttttgttctagactcttgaggctggtaagcctatcggccggggtccaatgtgggatatgacccataaaagggcagat 265  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||| ||||    
T  24499351 gttatttgattcataattatactttttgttctagaatcttgaggctggtaagcctgtcggtcggggtccaatgtgggatatgacccacaaaagggaagat 24499252  T
Q  266 gggaagtat 274  Q
    |||||||||    
T  24499251 gggaagtat 24499243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 180
Target Start/End: Complemental strand, 18604036 - 18603991
Alignment:
Q  135 tagctaattcattgtttaagttgactattaagttatttgattcata 180  Q
    ||||||||||||| |||||||| | |||||||||||||||||||||    
T  18604036 tagctaattcattatttaagttaattattaagttatttgattcata 18603991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 115 - 274
Target Start/End: Complemental strand, 18560533 - 18560374
Alignment:
Q  115 tgtttgtctattactatatgtagctaattcattgtttaagttgactattaagttatttgattcataattatactttttgttctagactcttgaggctggt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18560533 tgtttgtctattactatatgtagctaattcattgtttaagttgactattaagttatttgattcataattatactttttgttctagactcttgaggctggt 18560434  T
Q  215 aagcctatcggccggggtccaatgtgggatatgacccataaaagggcagatgggaagtat 274  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  18560433 aagcctgtcggccggggtccaatgtgggatatgacccacaaaagggcagatgggaagtat 18560374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 29274912 - 29274857
Alignment:
Q  1 gctaaaccaacaatatgttagctaaatagttaatcaactatagttactgatatgtt 56  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||    
T  29274912 gctaaaccaacaatatgttagctaaatagctaatcaactatagttacggatgtgtt 29274857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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