View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10667_high_5 (Length: 263)
Name: NF10667_high_5
Description: NF10667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10667_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 133 - 252
Target Start/End: Original strand, 7652569 - 7652688
Alignment:
| Q |
133 |
gtgatataacggacagtcatcacctaatttgaaaactgacctcaattagtagaaatccctaggtattttgataaggtatgtgggttcaccaagctccaaa |
232 |
Q |
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| T |
7652569 |
gtgatatgacggactatcatcacctaatttaaaaactgacctcaattagtagaaatccctaggtattttgataaagtatgtgggttcaccaagctctgaa |
7652668 |
T |
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| Q |
233 |
ccttcattcttcttcccttt |
252 |
Q |
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|||||||||||||||||||| |
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| T |
7652669 |
ccttcattcttcttcccttt |
7652688 |
T |
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Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 154 - 247
Target Start/End: Original strand, 35091906 - 35092000
Alignment:
| Q |
154 |
acctaatttga-aaactgacctcaattagtagaaatccctaggtattttgataaggtatgtgggttcaccaagctccaaaccttcattcttcttc |
247 |
Q |
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| T |
35091906 |
acctaatttgagaaactcacctcaattagtagaaatccctcaagattttgatgaagtgtgtgggttcaccaagctccaaaccttcattattcttc |
35092000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 244
Target Start/End: Complemental strand, 32090624 - 32090578
Alignment:
| Q |
198 |
ttttgataaggtatgtgggttcaccaagctccaaaccttcattcttc |
244 |
Q |
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| T |
32090624 |
ttttgatgaagtgtgtgggttcaccaagctctaaaccttcattcttc |
32090578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 245
Target Start/End: Complemental strand, 40927818 - 40927790
Alignment:
| Q |
217 |
ttcaccaagctccaaaccttcattcttct |
245 |
Q |
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| T |
40927818 |
ttcaccaagctccaaaccttcattcttct |
40927790 |
T |
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