View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10667_high_7 (Length: 240)
Name: NF10667_high_7
Description: NF10667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10667_high_7 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 26611458 - 26611231
Alignment:
| Q |
19 |
attcattaaatttaagtgctttattcgatgtgacaatgtacaacccaannnnnnnnnnnnnnnnnnnnncatgcattggagatgcctaaaactttctctt |
118 |
Q |
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| T |
26611458 |
attcattaaatttaagtgctttattcgatgtgacaatgtacaacccaattttttaatgtttttaattttcattcattg-agatgcctaaaactttctctt |
26611360 |
T |
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| Q |
119 |
tttaccatcaacaaaacaaaaaggataactatnnnnnnnnn-------tgttttctcaacaacaaaagatatattatggaccctatgatcatcatcaaat |
211 |
Q |
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| T |
26611359 |
tttaccatcaacaaaacaaaaaggataacagtaaaaaaaaaaaatatatgttttctcaacaacagaagatatattatggaccctatgatcatcatcaaat |
26611260 |
T |
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| Q |
212 |
ggccttttttcctccatgcatgaaaagaa |
240 |
Q |
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| T |
26611259 |
ggccttttttcctccatgcatgaaaagaa |
26611231 |
T |
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