View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10667_low_10 (Length: 271)
Name: NF10667_low_10
Description: NF10667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10667_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 11 - 256
Target Start/End: Complemental strand, 3079292 - 3079047
Alignment:
| Q |
11 |
taattttgtctaaaaagtagtattaacaaataactaattaatttccaaaagaaaaacataccttgtatacaggaccaaatccaccttctcctagtttaca |
110 |
Q |
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||||||||||||||||||| || ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3079292 |
taattttgtctaaaaagtattactaacaaacaactaaataatttccaaaagaaaaacataccttgtatacaggaccaaatccaccttctcctagtttaca |
3079193 |
T |
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| Q |
111 |
taattctgaaaagttattagtgctttgtcgaatccaaattaaagggattattgggaggtcggcattatatgaatcctctccttgagtatggccatgctga |
210 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||| ||| |
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| T |
3079192 |
aaattctgaaaagttattagtgctttgtcgaatccatattaaagggattattgggaggtctgcattatatgtatcctctccttgaatatggccatgttga |
3079093 |
T |
|
| Q |
211 |
gatataggagttgtctttgatggtagttcatctgtatttaaaataa |
256 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
3079092 |
gatataggagttgtctttgatggtagtccatctgtatttaaaataa |
3079047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 62 - 237
Target Start/End: Original strand, 4549716 - 4549891
Alignment:
| Q |
62 |
aaaaacataccttgtatacaggaccaaatccaccttctcctagtttacataattctgaaaagttattagtgctttgtcgaatccaaattaaagggattat |
161 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4549716 |
aaaaacataccttgtaaacaggaccaaatccaccttctcctagtttacataattctgaaaagttattagtgctttgtcgaatccaaattaaagggattat |
4549815 |
T |
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| Q |
162 |
tgggaggtcggcattatatgaatcctctccttgagtatggccatgctgagatataggagttgtctttgatggtagt |
237 |
Q |
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| T |
4549816 |
tgggaggtctgcattatatgtatcctctccttgagtatggccaggatgagatataggaattttctttgatgctagt |
4549891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 63 - 248
Target Start/End: Complemental strand, 3093726 - 3093541
Alignment:
| Q |
63 |
aaaacataccttgtatacaggaccaaatccaccttctcctagtttacataattctgaaaagttattagtgctttgtcgaatccaaattaaagggattatt |
162 |
Q |
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||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3093726 |
aaaacataccttgtaaacaggaccaaaaccacctgctcctagtttacataattctgaaaagttattagtgctttgtcgaatccatattaaagggattatt |
3093627 |
T |
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| Q |
163 |
gggaggtcggcattatatgaatcctctccttgagtatggccatgctgagatataggagttgtctttgatggtagttcatctgtatt |
248 |
Q |
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| T |
3093626 |
gggaggtctgcattatatgtatcctctccttgaatatggccatgatgagatatgggaattgtctttgatggtattccatctatatt |
3093541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 67 - 131
Target Start/End: Original strand, 15704547 - 15704611
Alignment:
| Q |
67 |
cataccttgtatacaggaccaaatccaccttctcctagtttacataattctgaaaagttattagt |
131 |
Q |
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| T |
15704547 |
cataccttgtaaacaggaccaaatccaccttctcctaactttgatgattctgaaaagtaattagt |
15704611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 67 - 127
Target Start/End: Original strand, 15806131 - 15806191
Alignment:
| Q |
67 |
cataccttgtatacaggaccaaatccaccttctcctagtttacataattctgaaaagttat |
127 |
Q |
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| T |
15806131 |
cataccttgtaaacagggccaaatccaccttctcctaatttagatgactctgaaaagttat |
15806191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 170
Target Start/End: Original strand, 15712591 - 15712691
Alignment:
| Q |
70 |
accttgtatacaggaccaaatccaccttctcctagtttacataattctgaaaagttattagtgctttgtcgaatccaaattaaagggattattgggaggt |
169 |
Q |
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|||||||| |||| ||||||||||||| ||||| |||| | | |||||||||| || |||||||||| ||| |||||||||||||||||| |||| |
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| T |
15712591 |
accttgtaaacagatccaaatccaccttgtcctaatttagttgactctgaaaagtaatcagtgctttgttgaagtacaattaaagggattattggaaggt |
15712690 |
T |
|
| Q |
170 |
c |
170 |
Q |
| |
|
| |
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|
| T |
15712691 |
c |
15712691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 159
Target Start/End: Original strand, 15814026 - 15814117
Alignment:
| Q |
68 |
ataccttgtatacaggaccaaatccaccttctcctagtttacataattctgaaaagttattagtgctttgtcgaatccaaattaaagggatt |
159 |
Q |
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|||||||||| || || ||||||||||||||||||| |||| || | || |||||||||| ||||||||| |||| | ||||||||||| |
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| T |
15814026 |
ataccttgtaaactgggccaaatccaccttctcctaatttaaatgactccgaaaagttatcggtgctttgttgaattacagttaaagggatt |
15814117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 128
Target Start/End: Original strand, 15792400 - 15792461
Alignment:
| Q |
67 |
cataccttgtatacaggaccaaatccaccttctcctagtttacataattctgaaaagttatt |
128 |
Q |
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||||||||||| ||||| |||||||| |||||||||| |||| | | |||||||||||||| |
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| T |
15792400 |
cataccttgtagacagggccaaatccgccttctcctaatttagacgactctgaaaagttatt |
15792461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 124
Target Start/End: Original strand, 15800582 - 15800639
Alignment:
| Q |
67 |
cataccttgtatacaggaccaaatccaccttctcctagtttacataattctgaaaagt |
124 |
Q |
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||||||||||| || || ||||||||||||||||||| |||| || | |||||||||| |
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| T |
15800582 |
cataccttgtaaactgggccaaatccaccttctcctaatttatatgactctgaaaagt |
15800639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 101
Target Start/End: Original strand, 2663433 - 2663461
Alignment:
| Q |
73 |
ttgtatacaggaccaaatccaccttctcc |
101 |
Q |
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| T |
2663433 |
ttgtatacaggaccaaatccaccttctcc |
2663461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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