View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10667_low_18 (Length: 238)
Name: NF10667_low_18
Description: NF10667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10667_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 42450690 - 42450584
Alignment:
| Q |
1 |
ttattttaaggaagagagtgaaactggaagtggaacttctttctttggcgagaaaagatgacaacgctagcaaagctcgtcttgcagatgtaagtatcga |
100 |
Q |
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| T |
42450690 |
ttattttgaggaagagagtgaaactggaagtggaacttctttctttggcgagaaaagatgacaacgctagcaaagctcgtcttgcagatgtaagtatcga |
42450591 |
T |
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| Q |
101 |
tttcgag |
107 |
Q |
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||||||| |
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| T |
42450590 |
tttcgag |
42450584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 743428 - 743322
Alignment:
| Q |
1 |
ttattttaaggaagagagtgaaactggaagtggaacttctttctttg----gcgagaaaagatgacaacgctagcaaagctcgtcttgcagatgtaagta |
96 |
Q |
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| T |
743428 |
ttattttaaggaagagagtgaaactggaagttgaacttctttctttgggccgggaaaaaagacgacaacgctagcaaagttcgtcttgcagatgtaagta |
743329 |
T |
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| Q |
97 |
tcgattt |
103 |
Q |
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| ||||| |
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| T |
743328 |
tggattt |
743322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 95
Target Start/End: Original strand, 10045176 - 10045263
Alignment:
| Q |
8 |
aaggaagagagtgaaactggaagtggaacttctttctttggcgagaaaagatgacaacgctagcaaagctcgtcttgcagatgtaagt |
95 |
Q |
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|||||||||| || |||||||||||||||||| | |||||| || | | || ||||| ||||||||||||||||||| ||||||||| |
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| T |
10045176 |
aaggaagagaatgcaactggaagtggaacttcatgctttggagaaagaggaggacaaagctagcaaagctcgtcttgtcgatgtaagt |
10045263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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