View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10667_low_2 (Length: 390)
Name: NF10667_low_2
Description: NF10667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10667_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 377
Target Start/End: Original strand, 341223 - 341596
Alignment:
| Q |
18 |
aaaaacatcatacataaccttcatcttggtggaatgtaaagttggcctagcat----tactaaaacaaagaccgttgcgagccagctaaataacatgaaa |
113 |
Q |
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| T |
341223 |
aaaaacatcatacataaccttcatcttggtggaatgtaaagttggcctagcatgcattactaaaacaaagaccgttacgagccagctaaataacatgaaa |
341322 |
T |
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| Q |
114 |
aatgtgaaccattctaacaagtaataattttcgagt---------agtacaacaattaagcatcacataaataaacaatcttaagtgaaagaagagggaa |
204 |
Q |
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| T |
341323 |
aatgtgaaccattctaacaagtaataattttcgagtcttaggagtagtacaacaattaagcatcacataaataaacaatcttaagcgagagaagagggaa |
341422 |
T |
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| Q |
205 |
ggacgactccaacaactttatttctcaagaaacacattatgatgaagaatgacactagggataacgctgcttttactc--tgataaaaattgattgaaat |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||| |
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| T |
341423 |
ggacgactccaacaactttatttctcaagaaacacattatgatgaagaatgacactagggataacactgcttttactctatgatacaaattgattgaaat |
341522 |
T |
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| Q |
303 |
attctaacacattcaccaaaggactccccaaccaattatccatgccattagacatatgtttcttaattcgtgtct |
377 |
Q |
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|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
341523 |
attc-aacacattcaccaaaggacaccccaaccaattatccatgccattagacatatgtttcttaattcgtgtct |
341596 |
T |
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