View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10667_low_21 (Length: 234)
Name: NF10667_low_21
Description: NF10667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10667_low_21 |
 | |
|
| [»] scaffold0012 (1 HSPs) |
| | |
|
| [»] scaffold0125 (2 HSPs) |
| | |
|
| [»] scaffold0265 (1 HSPs) |
| | |
|
| [»] scaffold0093 (1 HSPs) |
| | |
|
| [»] scaffold0111 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 12 - 228
Target Start/End: Complemental strand, 20938815 - 20938598
Alignment:
| Q |
12 |
caaaggtaattcactttcgtatgattgcggataaaattaaaaataaactagctacttggaaaggtcgcgttctgtc-attatgggaagggtgcagcttgt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| | ||||| |||||||||||||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
20938815 |
caaaggtaattcactttcgtatgattgcggataaaaataaacacaaactcgctacttggaaaggtcgcgttctgtccattatgggaatggtgcagcttgt |
20938716 |
T |
|
| Q |
111 |
taaatcattgattcatgggatgcttgtatactctttccatgtttaccttcggcctagaaggttgctgcgtcttcttgattcgtggattaaaaatttcatc |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20938715 |
taaatcattgattcatgggatgcttgtatactctttccatgtttacctttggcctagaaggttgctgcgtcttcttgattcgtggattaaaaatttcatc |
20938616 |
T |
|
| Q |
211 |
tggagtggtgatgtccat |
228 |
Q |
| |
|
||||||||||| |||||| |
|
|
| T |
20938615 |
tggagtggtgacgtccat |
20938598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 12 - 224
Target Start/End: Complemental strand, 10610322 - 10610109
Alignment:
| Q |
12 |
caaaggtaattcactttcgtatgattgcggataaaattaaaaataaactagctacttggaaaggtcgcgttctgtca-ttatgggaagggtgcagcttgt |
110 |
Q |
| |
|
||||||| |||||| ||||||||||| | ||||||||||||||||||||||||||| |||||||||| || ||||| |||| ||||||||||||||| | |
|
|
| T |
10610322 |
caaaggtgattcacattcgtatgattacagataaaattaaaaataaactagctactaggaaaggtcgaattttgtcaattataggaagggtgcagcttct |
10610223 |
T |
|
| Q |
111 |
taaatcattgattcatgggatgcttgtatactctttccatgtttaccttcggcctagaaggttgctgcgtcttcttgattcgtggattaaaaatttcatc |
210 |
Q |
| |
|
||||||||| || || ||||||||||| ||||||||||||||||||||| ||||||||||| || || | ||||||||||||||||| ||||||||||| |
|
|
| T |
10610222 |
taaatcattaatccacgggatgcttgtgtactctttccatgtttacctttggcctagaaggctgatgtggcttcttgattcgtggataaaaaatttcata |
10610123 |
T |
|
| Q |
211 |
tggagtggtgatgt |
224 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
10610122 |
tggagtggtgatgt |
10610109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 12 - 228
Target Start/End: Complemental strand, 25973014 - 25972797
Alignment:
| Q |
12 |
caaaggtaattcactttcgtatgattgcggataaaattaaaaataaactagctacttggaaaggtcgcgttctgtc-attatgggaagggtgcagcttgt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
25973014 |
caaaggtaattcactttcgtatgattgcggataaaattaaaaacaaactagctacttggaaaggtcgcattctgtccattatgggaagggtgcagcttgt |
25972915 |
T |
|
| Q |
111 |
taaatcattgattcatgggatgcttgtatactctttccatgtttaccttcggcctagaaggttgctgcgtcttcttgattcgtggattaaaaatttcatc |
210 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
25972914 |
taaatcattgtttcatgggatgcttgtatactctttccatgtttacctttggcctagaaggttgctgcgttttcttgattcgtggattaaaaatttcatc |
25972815 |
T |
|
| Q |
211 |
tggagtggtgatgtccat |
228 |
Q |
| |
|
||||||| ||| |||||| |
|
|
| T |
25972814 |
tggagtgatgacgtccat |
25972797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 33236046 - 33235866
Alignment:
| Q |
18 |
taattcactttcgtatgattgcggataaaattaaaaataaactagctacttggaaaggtcgcgttctgtca-ttatgggaagggtgcagcttgttaaatc |
116 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||||| ||||||||||||| ||| | |||| ||| |||||||||||||||| ||||| ||||| |
|
|
| T |
33236046 |
taattcactttcgtatgattgcagacaaaattaaaaataaattagctacttggaagggtagaattctttcaattatgggaagggtgcaacttgtaaaatc |
33235947 |
T |
|
| Q |
117 |
attgattcatgggatgcttgtatactctttccatgtttaccttcggcctagaaggttgctgcgtcttcttgattcgtggat |
197 |
Q |
| |
|
| | || |||||||||||||| || |||||||||||||| ||| ||||| ||||| || |||| | |||||||||||||| |
|
|
| T |
33235946 |
aataatacatgggatgcttgtttattctttccatgtttatctttggcctcgaaggctgttgcggttacttgattcgtggat |
33235866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 168
Target Start/End: Original strand, 32300147 - 32300303
Alignment:
| Q |
13 |
aaaggtaattcactttcgtatgattgcggataaaattaaaaataaactagctacttggaaaggtcgcgttctgtc-attatgggaagggtgcagcttgtt |
111 |
Q |
| |
|
||||||||||||||| | |||||| | || ||||||| |||||||||||||||||||| ||| | |||| || |||||| | || |||||||| || |
|
|
| T |
32300147 |
aaaggtaattcacttcagaatgattacagacaaaattagaaataaactagctacttggaggggtaccattctttcaattatgagcagcgtgcagctggtg |
32300246 |
T |
|
| Q |
112 |
aaatcattgattcatgggatgcttgtatactctttccatgtttaccttcggcctaga |
168 |
Q |
| |
|
||||| | ||||||||||||||||| || || ||||||||||| || |||||||| |
|
|
| T |
32300247 |
aaatctattattcatgggatgcttgtttattcattccatgtttaaatttggcctaga |
32300303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 14 - 218
Target Start/End: Complemental strand, 41345859 - 41345654
Alignment:
| Q |
14 |
aaggtaattcactttcgtatgattgcggataaaattaaaaataaactagctacttggaaaggtcgcgttctgtca-ttatgggaagggtgcagcttgtta |
112 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||| | |||||||| |||||| |||||||||||||||| |
|
|
| T |
41345859 |
aaggtaattcactttcgtatgattgcagataaaattaaaaataaattagccacttggaaaggtagaattctgtcaattatggatagggtgcagcttgtta |
41345760 |
T |
|
| Q |
113 |
aatcattgattcatgggatgcttgtatactctttccatgtttaccttcggcctagaaggttgctgcgtcttcttgattcgtggattaaaaatttcatctg |
212 |
Q |
| |
|
||||| | || |||||||||||||| ||||||||||| ||||| ||| ||||||||||| |||| |||||||||||||| ||||||||||||||||| || |
|
|
| T |
41345759 |
aatcaataatccatgggatgcttgtgtactctttccacgtttatctttggcctagaaggctgctccgtcttcttgattcatggattaaaaatttcatttg |
41345660 |
T |
|
| Q |
213 |
gagtgg |
218 |
Q |
| |
|
|||||| |
|
|
| T |
41345659 |
gagtgg |
41345654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 15 - 218
Target Start/End: Complemental strand, 29304935 - 29304729
Alignment:
| Q |
15 |
aggtaattcactttcgtatgattgcggataaaatt-aaaaataaactagctacttggaaaggtcgcgttctgtca-ttatgggaagggtgcagcttgtta |
112 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| ||||| ||| |||| |||||||||||| | |||||||| |||||||| ||||||||||||||| |
|
|
| T |
29304935 |
aggtaattcactttcgtatgattgcagataaaatttaaaaaaaaaatagccacttggaaaggtagaattctgtcaattatgggacgggtgcagcttgtta |
29304836 |
T |
|
| Q |
113 |
aatcattgattcatgggatgcttgtatactctttccatgttt-accttcggcctagaaggttgctgcgtcttcttgattcgtggattaaaaatttcatct |
211 |
Q |
| |
|
||||| | || |||||||||||||| ||||||||||| |||| | | | ||| ||||||| |||| |||||||||||||| ||||||||||||||||| | |
|
|
| T |
29304835 |
aatcaataatccatgggatgcttgtgtactctttccacgtttaatcgttggcatagaaggctgcttcgtcttcttgattcatggattaaaaatttcattt |
29304736 |
T |
|
| Q |
212 |
ggagtgg |
218 |
Q |
| |
|
||||||| |
|
|
| T |
29304735 |
ggagtgg |
29304729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 12 - 221
Target Start/End: Original strand, 21462847 - 21463057
Alignment:
| Q |
12 |
caaaggtaattcactttcgtatgattgcggataaaattaaaaataaactagctacttggaaaggtcgcgttctgtca-ttatgggaagggtgcagcttgt |
110 |
Q |
| |
|
|||||| ||||||||| ||| |||| |||||||||||||||||| | || |||||||||||||| || ||||| |||||||| |||||||||| || |
|
|
| T |
21462847 |
caaaggcaattcacttccgtgggattatagataaaattaaaaataaattggcgacttggaaaggtcgaattttgtcaattatgggacgggtgcagctagt |
21462946 |
T |
|
| Q |
111 |
taaatcattgattcatgggatgcttgtatactctttccatgtttaccttcggcctagaaggttgctgcgtcttcttgattcgtggattaaaaatttcatc |
210 |
Q |
| |
|
|| |||| | |||||||| |||||||| |||||||| ||||| || || ||||||||||||| ||||| ||||| || |||||| | ||||||||||| |
|
|
| T |
21462947 |
tatatcaataattcatggaatgcttgtgtactcttttcatgtgtatctctggcctagaaggttactgcggcttctggactcgtggttaaaaaatttcatt |
21463046 |
T |
|
| Q |
211 |
tggagtggtga |
221 |
Q |
| |
|
||||||||||| |
|
|
| T |
21463047 |
tggagtggtga |
21463057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 12 - 224
Target Start/End: Original strand, 21811226 - 21811439
Alignment:
| Q |
12 |
caaaggtaattcactttcgtatgattgcggataaaattaaaaataaactagctacttggaaaggtcgcgttctgtca-ttatgggaagggtgcagcttgt |
110 |
Q |
| |
|
||||||||| ||||||||| || ||| |||| | |||||||| ||| |||||||||||| || ||| |||| ||| ||||||| | |||||| ||||| |
|
|
| T |
21811226 |
caaaggtaactcactttcgcataattacggacagaattaaaagcaaatcagctacttggaagggacgcattctttcaattatgggcatggtgcaacttgt |
21811325 |
T |
|
| Q |
111 |
taaatcattgattcatgggatgcttgtatactctttccatgtttaccttcggcctagaaggttgctgcgtcttcttgattcgtggattaaaaatttcatc |
210 |
Q |
| |
|
||||| | |||||||| |||||||| |||||||||||||| || ||| |||||| |||| |||| || ||||||||||| ||||| ||||| || || |
|
|
| T |
21811326 |
aaaatctgtaattcatggcatgcttgtctactctttccatgtatatctttggcctaaaaggctgctccggcttcttgattcatggataaaaaactttatt |
21811425 |
T |
|
| Q |
211 |
tggagtggtgatgt |
224 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
21811426 |
tggagtggtgatgt |
21811439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 12 - 224
Target Start/End: Complemental strand, 57717 - 57504
Alignment:
| Q |
12 |
caaaggtaattcactttcgtatgattgcggataaaattaaaaataaactagctacttggaaaggtcgcgttctgtc-attatgggaagggtgcagcttgt |
110 |
Q |
| |
|
||||||||| ||||||||| || ||| |||||| ||| |||| ||| ||||||||||||| || ||| |||| || |||||||| |||||||||||||| |
|
|
| T |
57717 |
caaaggtaactcactttcgcataattacggatagaataaaaagcaaattagctacttggaagggacgcattctttcgattatgggcagggtgcagcttgt |
57618 |
T |
|
| Q |
111 |
taaatcattgattcatgggatgcttgtatactctttccatgtttaccttcggcctagaaggttgctgcgtcttcttgattcgtggattaaaaatttcatc |
210 |
Q |
| |
|
||||| | |||||||| ||| |||| |||||||||||||| || || ||||||||||| |||| || ||||||||||| ||||| |||||||| || |
|
|
| T |
57617 |
aaaatctgtaattcatggcatgattgtctactctttccatgtatatctatggcctagaaggctgctccggcttcttgattcatggatcaaaaattttatt |
57518 |
T |
|
| Q |
211 |
tggagtggtgatgt |
224 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
57517 |
tggagtggagatgt |
57504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0125 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: scaffold0125
Description:
Target: scaffold0125; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 41 - 224
Target Start/End: Complemental strand, 25503 - 25319
Alignment:
| Q |
41 |
gataaaattaaaaataaactagctacttggaaaggtcgcgttctgtca-ttatgggaagggtgcagcttgttaaatcattgattcatgggatgcttgtat |
139 |
Q |
| |
|
|||||||||||||||||| | || |||||||||||||| || ||||| |||||||| |||||||||| ||||||||| | |||||||| |||||||| | |
|
|
| T |
25503 |
gataaaattaaaaataaattggcaacttggaaaggtcgtattttgtcaattatgggacgggtgcagctagttaaatcaataattcatggtatgcttgtgt |
25404 |
T |
|
| Q |
140 |
actctttccatgtttaccttcggcctagaaggttgctgcgtcttcttgattcgtggattaaaaatttcatctggagtggtgatgt |
224 |
Q |
| |
|
||||||| ||||| || || ||||||||||||| |||| ||| | || |||||| | ||||||||||| |||||||||||||| |
|
|
| T |
25403 |
actcttttcatgtgtatctctggcctagaaggttattgcggcttttggactcgtggttaaaaaatttcatttggagtggtgatgt |
25319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0125; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 41 - 224
Target Start/End: Complemental strand, 37488 - 37304
Alignment:
| Q |
41 |
gataaaattaaaaataaactagctacttggaaaggtcgcgttctgtca-ttatgggaagggtgcagcttgttaaatcattgattcatgggatgcttgtat |
139 |
Q |
| |
|
|||||||||||||||||| | || |||||||||||||| || ||||| |||||||| |||||||||| ||||||||| | ||||||| ||||||| | |
|
|
| T |
37488 |
gataaaattaaaaataaattggcaacttggaaaggtcgtattttgtcaattatgggacgggtgcagctagttaaatcaatatttcatggaatgcttgggt |
37389 |
T |
|
| Q |
140 |
actctttccatgtttaccttcggcctagaaggttgctgcgtcttcttgattcgtggattaaaaatttcatctggagtggtgatgt |
224 |
Q |
| |
|
||||||| ||||| || || ||||||||||||| ||| ||| | || |||||| | ||||||||||| |||||||||||||| |
|
|
| T |
37388 |
actcttttcatgtgtatctctggcctagaaggttattgcagcttttggactcgtggttaaaaaatttcatttggagtggtgatgt |
37304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 41 - 224
Target Start/End: Original strand, 17831618 - 17831802
Alignment:
| Q |
41 |
gataaaattaaaaataaactagctacttggaaaggtcgcgttctgtca-ttatgggaagggtgcagcttgttaaatcattgattcatgggatgcttgtat |
139 |
Q |
| |
|
|||||||||||||||||| | || |||||||||||||| || ||||| |||||||| |||||||||| ||||||||| | |||||||| |||||||| | |
|
|
| T |
17831618 |
gataaaattaaaaataaattggcaacttggaaaggtcgtattttgtcaattatgggatgggtgcagctagttaaatcaataattcatggcatgcttgtgt |
17831717 |
T |
|
| Q |
140 |
actctttccatgtttaccttcggcctagaaggttgctgcgtcttcttgattcgtggattaaaaatttcatctggagtggtgatgt |
224 |
Q |
| |
|
||||||| ||||| || ||| ||||||||||||| |||| ||| | || || ||| | ||||||||||| |||||||||||||| |
|
|
| T |
17831718 |
actcttttcatgtgtatctttggcctagaaggttattgcggcttttggactcatggttaaaaaatttcatttggagtggtgatgt |
17831802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0265 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0265
Description:
Target: scaffold0265; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 12 - 224
Target Start/End: Complemental strand, 21583 - 21370
Alignment:
| Q |
12 |
caaaggtaattcactttcgtatgattgcggataaaattaaaaataaactagctacttggaaaggtcgcgttctgtca-ttatgggaagggtgcagcttgt |
110 |
Q |
| |
|
||||||||| ||||||||| || ||| |||| | |||||||| ||| ||||||||||||| || ||| |||| ||| ||||||| | |||||| ||||| |
|
|
| T |
21583 |
caaaggtaactcactttcgcataattacggacagaattaaaagcaaattagctacttggaagggacgcattctttcaattatgggcatggtgcaacttgt |
21484 |
T |
|
| Q |
111 |
taaatcattgattcatgggatgcttgtatactctttccatgtttaccttcggcctagaaggttgctgcgtcttcttgattcgtggattaaaaatttcatc |
210 |
Q |
| |
|
||||| | |||||||| |||||||| |||||||||||||| || ||| |||||| |||| |||| || ||||||||||| ||||| ||||| || || |
|
|
| T |
21483 |
aaaatctgtaattcatggcatgcttgtctactctttccatgtatatctttggcctaaaaggctgctccggcttcttgattcatggataaaaaactttatt |
21384 |
T |
|
| Q |
211 |
tggagtggtgatgt |
224 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
21383 |
tggagtggtgatgt |
21370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 17 - 224
Target Start/End: Original strand, 10136938 - 10137146
Alignment:
| Q |
17 |
gtaattcactttcgtatgattgcggataaaattaaaaataaactagctacttggaaaggtcgcgttctgtca-ttatgggaagggtgcagcttgttaaat |
115 |
Q |
| |
|
|||||||||||||||||| |||| || |||||| |||||||| |||| |||||||||||| | |||| ||| ||||||| |||||||||||||| |||| |
|
|
| T |
10136938 |
gtaattcactttcgtatggttgcagacaaaatttaaaataaattagccacttggaaaggtagaattctttcaattatgggcagggtgcagcttgtaaaat |
10137037 |
T |
|
| Q |
116 |
cattgattcatgggatgcttgtatactctttccatgtttaccttcggcctagaaggttgctgcgtcttcttgattcgtggattaaaaatttcatctggag |
215 |
Q |
| |
|
|| | || |||||||||||||| || ||||||||||| || ||| ||||| ||||| | ||| | | |||||||||||||| ||||| | || | ||| |
|
|
| T |
10137038 |
caataatacatgggatgcttgtctattctttccatgtgtatctttggcctcgaaggctcctgaggttacttgattcgtggataaaaaaaattatttagag |
10137137 |
T |
|
| Q |
216 |
tggtgatgt |
224 |
Q |
| |
|
||||||||| |
|
|
| T |
10137138 |
tggtgatgt |
10137146 |
T |
|
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Target: chr5 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 12 - 224
Target Start/End: Complemental strand, 21879862 - 21879649
Alignment:
| Q |
12 |
caaaggtaattcactttcgtatgattgcggataaaattaaaaataaactagctacttggaaaggtcgcgttctgtca-ttatgggaagggtgcagcttgt |
110 |
Q |
| |
|
||||||||| ||||||||| || ||| |||| | ||| |||| ||| ||||||||||||| || ||| |||| ||| ||||||| |||||||||||||| |
|
|
| T |
21879862 |
caaaggtaactcactttcgcataattacggacagaataaaaagcaaattagctacttggaagggacgcattctttcaattatgggcagggtgcagcttgt |
21879763 |
T |
|
| Q |
111 |
taaatcattgattcatgggatgcttgtatactctttccatgtttaccttcggcctagaaggttgctgcgtcttcttgattcgtggattaaaaatttcatc |
210 |
Q |
| |
|
||||| | ||| |||| |||||| | |||||||||||||| || ||| |||||| |||| |||| || ||||||||||| ||||| ||||| || || |
|
|
| T |
21879762 |
aaaatctgtaatttatggcatgcttctctactctttccatgtatatctttggcctaaaaggctgctccggcttcttgattcatggataaaaaaatttatt |
21879663 |
T |
|
| Q |
211 |
tggagtggtgatgt |
224 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
21879662 |
tggagtggagatgt |
21879649 |
T |
|
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Target: chr4 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 12 - 224
Target Start/End: Complemental strand, 1926669 - 1926456
Alignment:
| Q |
12 |
caaaggtaattcactttcgtatgattgcggataaaattaaaaataaactagctacttggaaaggtcgcgttctgtca-ttatgggaagggtgcagcttgt |
110 |
Q |
| |
|
|||||||| ||||||||| || ||| ||| | |||||||| ||| ||||||||||||| || ||| |||| ||| ||||||| |||||||| ||||| |
|
|
| T |
1926669 |
caaaggtagctcactttcgcataattatggacagaattaaaagcaaattagctacttggaagggacgcattctttcaattatgggcagggtgcaacttgt |
1926570 |
T |
|
| Q |
111 |
taaatcattgattcatgggatgcttgtatactctttccatgtttaccttcggcctagaaggttgctgcgtcttcttgattcgtggattaaaaatttcatc |
210 |
Q |
| |
|
||||| | |||||||| |||||||| |||||||| ||||| || ||| |||||| |||| |||| || ||||||||||| ||||| ||||| || || |
|
|
| T |
1926569 |
aaaatctgtaattcatggcatgcttgtctactcttttcatgtatatctttggcctaaaaggctgctccggcttcttgattcatggataaaaaactttatt |
1926470 |
T |
|
| Q |
211 |
tggagtggtgatgt |
224 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
1926469 |
tggagtggtgatgt |
1926456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 41 - 224
Target Start/End: Complemental strand, 18027405 - 18027220
Alignment:
| Q |
41 |
gataaaattaaaaataaactag-ctacttggaaaggtcgcgttctgtca-ttatgggaagggtgcagcttgttaaatcattgattcatgggatgcttgta |
138 |
Q |
| |
|
|||||||| ||||||||| | | | |||||||||||||| || ||||| |||||||| |||||||||| ||||||||| | |||||||| |||||||| |
|
|
| T |
18027405 |
gataaaataaaaaataaaattggcaacttggaaaggtcgtattttgtcaattatgggacgggtgcagctagttaaatcaataattcatggcatgcttgtg |
18027306 |
T |
|
| Q |
139 |
tactctttccatgtttaccttcggcctagaaggttgctgcgtcttcttgattcgtggattaaaaatttcatctggagtggtgatgt |
224 |
Q |
| |
|
|||||||| ||||| || || ||||||||||||| |||| ||| | || |||||| | |||| ||||| |||||||||||||| |
|
|
| T |
18027305 |
tactcttttcatgtgtatctctggcctagaaggttattgcggcttttggactcgtggttagaaaaattcatttggagtggtgatgt |
18027220 |
T |
|
Back To:
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Target: chr3 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 41 - 224
Target Start/End: Complemental strand, 14676178 - 14675994
Alignment:
| Q |
41 |
gataaaattaaaaataaactagctacttggaaaggtcgcgttctgtca-ttatgggaagggtgcagcttgttaaatcattgattcatgggatgcttgtat |
139 |
Q |
| |
|
|||||||| ||||||||| | || |||||||||||||| || ||||| |||||||| |||||||||| ||||||||| | |||||||| |||||||| | |
|
|
| T |
14676178 |
gataaaataaaaaataaattggcaacttggaaaggtcgtattttgtcaattatgggacgggtgcagctagttaaatcaataattcatggcatgcttgtgt |
14676079 |
T |
|
| Q |
140 |
actctttccatgtttaccttcggcctagaaggttgctgcgtcttcttgattcgtggattaaaaatttcatctggagtggtgatgt |
224 |
Q |
| |
|
||||||| ||||| || || ||||||||||||| |||| ||| | || |||||| | |||| ||||| |||||||||||||| |
|
|
| T |
14676078 |
actcttttcatgtgtatctctggcctagaaggttattgcggcttttggactcgtggttagaaaaattcatttggagtggtgatgt |
14675994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0093 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0093
Description:
Target: scaffold0093; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 12 - 226
Target Start/End: Original strand, 14085 - 14299
Alignment:
| Q |
12 |
caaaggtaattcactttcgtatgattgcggataaaattaaaaataaactagctacttggaaaggtcgcgttctgtca-ttatgggaagggtgcagcttgt |
110 |
Q |
| |
|
||||||||||||||||| | || ||| | || | ||| |||| |||| |||| |||||||| || || |||| ||| ||||||| ||| | |||||||| |
|
|
| T |
14085 |
caaaggtaattcacttttgaataattactgacagaataaaaagtaaattagcaacttggaagggacgaattctctcaattatgggcagg-tacagcttgt |
14183 |
T |
|
| Q |
111 |
taaatcattgattcatgggatgcttgtatactctttccatgtttaccttcggcctagaaggttgctgcgtcttcttgattcgtggattaaaaatttcatc |
210 |
Q |
| |
|
||||| | ||||||| |||||||| |||||||| |||||||| ||| ||||||||||| |||| || ||||| ||||| | ||||||||| || || |
|
|
| T |
14184 |
aaaatctatcgttcatggcatgcttgtctactctttacatgtttatctttggcctagaaggctgctccgacttctcgattcttcgattaaaaaatttatt |
14283 |
T |
|
| Q |
211 |
tggagtggtgatgtcc |
226 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
14284 |
tggagtggtgatgtcc |
14299 |
T |
|
Back To:
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Target: scaffold0111 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0111
Description:
Target: scaffold0111; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 146
Target Start/End: Complemental strand, 43210 - 43152
Alignment:
| Q |
88 |
attatgggaagggtgcagcttgttaaatcattgattcatgggatgcttgtatactcttt |
146 |
Q |
| |
|
||||||||| | |||||||||||||||||| | |||||||| |||||||| || ||||| |
|
|
| T |
43210 |
attatgggacgagtgcagcttgttaaatcaatcattcatggtatgcttgtgtattcttt |
43152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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