View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10667_low_22 (Length: 227)
Name: NF10667_low_22
Description: NF10667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10667_low_22 |
 | |
|
| [»] chr5 (8 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 10047352 - 10047126
Alignment:
| Q |
1 |
gtctttgccatcattcacagcttccatcatggtcatacattgagaactctcaacattctgagcaggatcttgacctgtagccaagtaaatagcagaaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10047352 |
gtctttgccatcattcacagcttccatcatggtcatacattgagaactctcaacattctgagcaggatcttgacctgtagccaagtaaatagcagaaaca |
10047253 |
T |
|
| Q |
101 |
atattactagcatgtgcattgaatccaccaagagcaccagccatggctgaaccagtaagattttttaacatgttaagctcaaccaaagactccacactaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10047252 |
atattactagcatgtgcattgaatccaccaagagcaccagccatggctgaaccagtaagattttttaacatgttaagctcaaccaaagactccacactaa |
10047153 |
T |
|
| Q |
201 |
tcttcaacactttcttcaccacctctt |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
10047152 |
tcttcaacactttcttcaccacctctt |
10047126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 5 - 227
Target Start/End: Complemental strand, 39677143 - 39676921
Alignment:
| Q |
5 |
ttgccatcattcacagcttccatcatggtcatacattgagaactctcaacattctgagcaggatcttgacctgtagccaagtaaatagcagaaacaatat |
104 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||| || |||||||||| |
|
|
| T |
39677143 |
ttgccatcattaacagcttccatcatggtcatacaatgagaactctcaacattttgagcaggatcttgacctgttgccaagtaaactgctgaaacaatat |
39677044 |
T |
|
| Q |
105 |
tactagcatgtgcattgaatccaccaagagcaccagccatggctgaaccagtaagattttttaacatgttaagctcaaccaaagactccacactaatctt |
204 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
39677043 |
tactagcatgtgcattgaagccaccaagagcaccagccatggctgaaccagtaagatttttaagcatgttaagctcaaccaaagactccacgctagtctt |
39676944 |
T |
|
| Q |
205 |
caacactttcttcaccacctctt |
227 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
39676943 |
caacactttcttcaccacctctt |
39676921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 10867594 - 10867378
Alignment:
| Q |
11 |
tcattcacagcttccatcatggtcatacattgagaactctcaacattctgagcaggatcttgacctgtagccaagtaaatagcagaaacaatattactag |
110 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
10867594 |
tcattcacggcttccatcatggtcatacagtgagaactttcaacattctgagcaggatcttgtcctgtagccaagtaaattgcagaaacaatattactag |
10867495 |
T |
|
| Q |
111 |
catgtgcattgaatccaccaagagcaccagccatggctgaaccagtaagattttttaacatgttaagctcaaccaaagactccacactaatcttcaacac |
210 |
Q |
| |
|
|||||||||| || || |||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||| |||||| ||| |
|
|
| T |
10867494 |
catgtgcattaaagccgccaagagcaccagccatggctgaaccggtaaggttttttagcatgttaagctcaaccaaagactccacactagtcttcagcac |
10867395 |
T |
|
| Q |
211 |
tttcttcaccacctctt |
227 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
10867394 |
tttcttcaccacctctt |
10867378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 11 - 227
Target Start/End: Original strand, 10872718 - 10872934
Alignment:
| Q |
11 |
tcattcacagcttccatcatggtcatacattgagaactctcaacattctgagcaggatcttgacctgtagccaagtaaatagcagaaacaatattactag |
110 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
10872718 |
tcattcacggcttccatcatggtcatacagtgagaactttcaacattctgagcaggatcttgtcctgtagccaagtaaattgcagaaacaatattactag |
10872817 |
T |
|
| Q |
111 |
catgtgcattgaatccaccaagagcaccagccatggctgaaccagtaagattttttaacatgttaagctcaaccaaagactccacactaatcttcaacac |
210 |
Q |
| |
|
|||||||||| || || |||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||| |||||| ||| |
|
|
| T |
10872818 |
catgtgcattaaagccgccaagagcaccagccatggctgaaccggtaaggttttttagcatgttaagctcaaccaaagactccacactagtcttcagcac |
10872917 |
T |
|
| Q |
211 |
tttcttcaccacctctt |
227 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
10872918 |
tttcttcaccacatctt |
10872934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 11 - 227
Target Start/End: Original strand, 10877789 - 10878005
Alignment:
| Q |
11 |
tcattcacagcttccatcatggtcatacattgagaactctcaacattctgagcaggatcttgacctgtagccaagtaaatagcagaaacaatattactag |
110 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
10877789 |
tcattcacggcttccatcatggtcatacagtgagaactttcaacattctgagcaggatcttgtcctgtagccaagtaaattgcagaaacaatattactag |
10877888 |
T |
|
| Q |
111 |
catgtgcattgaatccaccaagagcaccagccatggctgaaccagtaagattttttaacatgttaagctcaaccaaagactccacactaatcttcaacac |
210 |
Q |
| |
|
|||||||||| || || |||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||| |||||| ||| |
|
|
| T |
10877889 |
catgtgcattaaagccgccaagagcaccagccatggctgaaccggtaaggttttttagcatgttaagctcaaccaaagactccacactagtcttcagcac |
10877988 |
T |
|
| Q |
211 |
tttcttcaccacctctt |
227 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
10877989 |
tttcttcaccacatctt |
10878005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 11 - 227
Target Start/End: Original strand, 10882860 - 10883076
Alignment:
| Q |
11 |
tcattcacagcttccatcatggtcatacattgagaactctcaacattctgagcaggatcttgacctgtagccaagtaaatagcagaaacaatattactag |
110 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
10882860 |
tcattcacggcttccatcatggtcatacagtgagaactttcaacattctgagcaggatcttgtcctgtagccaagtaaattgcagaaacaatattactag |
10882959 |
T |
|
| Q |
111 |
catgtgcattgaatccaccaagagcaccagccatggctgaaccagtaagattttttaacatgttaagctcaaccaaagactccacactaatcttcaacac |
210 |
Q |
| |
|
|||||||||| || || |||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||| |||||| ||| |
|
|
| T |
10882960 |
catgtgcattaaagccgccaagagcaccagccatggctgaaccggtaaggttttttagcatgttaagctcaaccaaagactccacactagtcttcagcac |
10883059 |
T |
|
| Q |
211 |
tttcttcaccacctctt |
227 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
10883060 |
tttcttcaccacatctt |
10883076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 11 - 227
Target Start/End: Original strand, 10886775 - 10886991
Alignment:
| Q |
11 |
tcattcacagcttccatcatggtcatacattgagaactctcaacattctgagcaggatcttgacctgtagccaagtaaatagcagaaacaatattactag |
110 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
10886775 |
tcattcacggcttccatcatggtcatacagtgagaactttcaacattctgagcaggatcttgtcctgtagccaagtaaattgcagaaacaatattactag |
10886874 |
T |
|
| Q |
111 |
catgtgcattgaatccaccaagagcaccagccatggctgaaccagtaagattttttaacatgttaagctcaaccaaagactccacactaatcttcaacac |
210 |
Q |
| |
|
||||||| || || || ||||| |||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||| |||||| ||| |
|
|
| T |
10886875 |
catgtgcgttaaagccgccaagtgcaccagccatggctgaaccggtaaggttttttagcatgttaagctcaaccaaagactccacactagtcttcagcac |
10886974 |
T |
|
| Q |
211 |
tttcttcaccacctctt |
227 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
10886975 |
tttcttcaccacctctt |
10886991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 8 - 180
Target Start/End: Complemental strand, 37950398 - 37950226
Alignment:
| Q |
8 |
ccatcattcacagcttccatcatggtcatacattgagaactctcaacattctgagcaggatcttgacctgtagccaagtaaatagcagaaacaatattac |
107 |
Q |
| |
|
|||||||| || ||||||||||| || || || || ||||| |||||||| ||||| ||||||||||| || || | |||| ||||||||||| |||| |
|
|
| T |
37950398 |
ccatcatttacggcttccatcattgttatgcaatgggaactttcaacattttgagctggatcttgaccagtggctataaaaatggcagaaacaatgttac |
37950299 |
T |
|
| Q |
108 |
tagcatgtgcattgaatccaccaagagcaccagccatggctgaaccagtaagattttttaacatgttaagctc |
180 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||| | || ||||||| ||| ||||| | |||||| ||||| |
|
|
| T |
37950298 |
tagcatgggcattgaatccaccaagagtgccagcaacagcagaaccagcaaggtttttgagcatgtttagctc |
37950226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 5 - 227
Target Start/End: Original strand, 30708002 - 30708224
Alignment:
| Q |
5 |
ttgccatcattcacagcttccatcatggtcatacattgagaactctcaacattctgagcaggatcttgacctgtagccaagtaaatagcagaaacaatat |
104 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||| || || | ||| | |||||| ||||| | |
|
|
| T |
30708002 |
ttgccatcattcacagcttccatcatggtaatacaatgagaactctccacattctgagcaggatcttgaccagtggctatgtagacagcagagacaatgt |
30708101 |
T |
|
| Q |
105 |
tactagcatgtgcattgaatccaccaagagcaccagccatggctgaaccagtaagattttttaacatgttaagctcaaccaaagactccacactaatctt |
204 |
Q |
| |
|
| |||||||| |||||||| ||||||||||||||||| | |||||| ||||| || || || | ||||||||||||||||| | |||||||||| |||| |
|
|
| T |
30708102 |
tgctagcatgagcattgaacccaccaagagcaccagcaagggctgatccagttaggttcttaagcatgttaagctcaaccagtgcctccacactagtctt |
30708201 |
T |
|
| Q |
205 |
caacactttcttcaccacctctt |
227 |
Q |
| |
|
||||||||||||||| ||||||| |
|
|
| T |
30708202 |
caacactttcttcacaacctctt |
30708224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University