View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10667_low_3 (Length: 360)
Name: NF10667_low_3
Description: NF10667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10667_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 11 - 344
Target Start/End: Original strand, 40261623 - 40261956
Alignment:
| Q |
11 |
atgaactatggacagtagagggaagcacactggttttgaaaaggtagataagtttccatcttgatctgaacaaatgatgttctccaatttttcgcacttg |
110 |
Q |
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| T |
40261623 |
atgaactatggacagtagagggaagcacactggttttgaaaaggtagataagtttccatcttgatctgaacaaatgatgttctccaatttttcgcacttg |
40261722 |
T |
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| Q |
111 |
cttacaacaagttcacttagctctgcaaggcttccaacaatagtgggagagaagatggtttccaagtttctacatccaaccagaaccaaactcttaagtt |
210 |
Q |
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| T |
40261723 |
cttacaacaagttcacttagctctgcaaggcttccaacaatagtgggagagaagatggtttccaagtttctacatccaaccagaaccaaactcttaagtt |
40261822 |
T |
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| Q |
211 |
tctgaagggtaaggatatcttttggacccttccaaataagcctcaactcaggcaattcctttaaacataaatgagataagcttgagttcaagggcgattg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40261823 |
tctgaagggtaaggatatcttttggacccttccaaataagcctcaactcaggcaattcctttaaacataaatgagataagcttgagttcaagggcgattg |
40261922 |
T |
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| Q |
311 |
tttttcagcttgcagttgaaaaataccttctagt |
344 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
40261923 |
tttttcagcttgcagttgaaaaataccttctagt |
40261956 |
T |
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