View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10667_low_5 (Length: 332)

Name: NF10667_low_5
Description: NF10667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10667_low_5
NF10667_low_5
[»] chr5 (13 HSPs)
chr5 (2-314)||(30622729-30623040)
chr5 (2-92)||(17208074-17208164)
chr5 (2-92)||(32473404-32473494)
chr5 (4-92)||(41334675-41334763)
chr5 (4-92)||(7617133-7617221)
chr5 (7-92)||(38470579-38470664)
chr5 (4-92)||(2614661-2614749)
chr5 (4-92)||(22512305-22512393)
chr5 (4-90)||(5256997-5257083)
chr5 (4-92)||(18033982-18034070)
chr5 (4-92)||(33801469-33801557)
chr5 (20-92)||(33855071-33855143)
chr5 (35-90)||(25915030-25915085)
[»] chr7 (26 HSPs)
chr7 (2-92)||(31513287-31513377)
chr7 (2-91)||(31408643-31408732)
chr7 (1-92)||(40236919-40237010)
chr7 (2-92)||(33384870-33384961)
chr7 (4-90)||(10573751-10573837)
chr7 (7-92)||(5194246-5194331)
chr7 (4-92)||(35069721-35069809)
chr7 (6-92)||(27535245-27535331)
chr7 (7-92)||(43317443-43317528)
chr7 (2-90)||(4638209-4638297)
chr7 (4-92)||(24001024-24001112)
chr7 (4-92)||(42538443-42538531)
chr7 (4-92)||(41861674-41861764)
chr7 (7-92)||(24280611-24280696)
chr7 (4-92)||(9216302-9216389)
chr7 (25-92)||(39998408-39998475)
chr7 (4-90)||(43343636-43343722)
chr7 (4-90)||(44326180-44326266)
chr7 (4-90)||(44416946-44417032)
chr7 (4-89)||(26898414-26898499)
chr7 (4-92)||(5015395-5015483)
chr7 (4-92)||(5810936-5811024)
chr7 (4-92)||(42972852-42972940)
chr7 (7-92)||(45326020-45326105)
chr7 (4-83)||(32029829-32029908)
chr7 (4-90)||(16180369-16180454)
[»] chr3 (24 HSPs)
chr3 (2-92)||(10457902-10457992)
chr3 (1-92)||(25996268-25996359)
chr3 (2-92)||(9434124-9434214)
chr3 (2-92)||(4190275-4190365)
chr3 (2-92)||(52627987-52628077)
chr3 (4-92)||(42100688-42100776)
chr3 (2-92)||(34791829-34791919)
chr3 (4-92)||(46941053-46941141)
chr3 (2-92)||(51757593-51757683)
chr3 (4-92)||(45126940-45127028)
chr3 (4-92)||(40808865-40808953)
chr3 (4-91)||(54237097-54237184)
chr3 (4-92)||(24688414-24688502)
chr3 (4-92)||(25413681-25413769)
chr3 (6-90)||(27748565-27748649)
chr3 (4-92)||(36150130-36150218)
chr3 (4-92)||(47191038-47191125)
chr3 (4-92)||(54246160-54246248)
chr3 (4-91)||(40480750-40480837)
chr3 (4-91)||(42394431-42394518)
chr3 (2-92)||(53273694-53273784)
chr3 (4-43)||(51249357-51249396)
chr3 (4-90)||(53581870-53581956)
chr3 (7-88)||(29558249-29558330)
[»] chr1 (23 HSPs)
chr1 (2-92)||(38335918-38336008)
chr1 (2-92)||(48119628-48119718)
chr1 (2-92)||(35003294-35003384)
chr1 (2-92)||(38113205-38113295)
chr1 (2-92)||(44112677-44112767)
chr1 (2-92)||(46168383-46168473)
chr1 (2-92)||(45639742-45639832)
chr1 (2-92)||(41065153-41065243)
chr1 (4-92)||(37814778-37814866)
chr1 (4-92)||(43571098-43571186)
chr1 (2-92)||(35000123-35000213)
chr1 (2-92)||(45427755-45427845)
chr1 (4-92)||(23989535-23989624)
chr1 (2-92)||(26585462-26585552)
chr1 (2-92)||(45705825-45705915)
chr1 (35-92)||(14427347-14427404)
chr1 (4-92)||(5489776-5489864)
chr1 (4-90)||(2497574-2497660)
chr1 (4-92)||(48498974-48499062)
chr1 (4-92)||(750317-750405)
chr1 (4-90)||(4401329-4401416)
chr1 (4-45)||(4888090-4888131)
chr1 (20-92)||(24769527-24769599)
[»] chr4 (33 HSPs)
chr4 (2-92)||(17619162-17619252)
chr4 (2-90)||(3756256-3756344)
chr4 (2-92)||(711960-712050)
chr4 (2-92)||(55272386-55272476)
chr4 (1-90)||(35037007-35037096)
chr4 (2-92)||(32728357-32728447)
chr4 (1-92)||(46827715-46827806)
chr4 (4-92)||(28988473-28988561)
chr4 (4-92)||(33703141-33703229)
chr4 (2-92)||(48435589-48435679)
chr4 (12-92)||(960890-960970)
chr4 (12-92)||(49229684-49229764)
chr4 (4-91)||(41878407-41878494)
chr4 (4-92)||(1771278-1771366)
chr4 (4-92)||(27316725-27316813)
chr4 (4-92)||(27864564-27864652)
chr4 (2-90)||(38851515-38851603)
chr4 (4-92)||(55966358-55966446)
chr4 (5-92)||(28982835-28982922)
chr4 (4-90)||(27893854-27893940)
chr4 (2-92)||(48463460-48463550)
chr4 (4-92)||(35017733-35017820)
chr4 (4-90)||(43949813-43949900)
chr4 (7-92)||(25051693-25051778)
chr4 (4-92)||(23035980-23036068)
chr4 (4-92)||(27550309-27550397)
chr4 (4-92)||(41847971-41848059)
chr4 (4-90)||(39631102-39631189)
chr4 (4-90)||(43514698-43514784)
chr4 (4-92)||(45490325-45490413)
chr4 (57-92)||(36004169-36004204)
chr4 (8-90)||(41327559-41327641)
chr4 (7-92)||(12496956-12497041)
[»] chr2 (28 HSPs)
chr2 (2-92)||(12415470-12415560)
chr2 (2-92)||(12427530-12427620)
chr2 (2-92)||(18491705-18491795)
chr2 (2-92)||(43114557-43114647)
chr2 (2-92)||(966844-966934)
chr2 (2-90)||(11825664-11825752)
chr2 (2-90)||(41281984-41282072)
chr2 (2-92)||(16803968-16804058)
chr2 (2-92)||(16843250-16843340)
chr2 (2-90)||(4299430-4299518)
chr2 (4-92)||(30838632-30838720)
chr2 (4-91)||(34817788-34817875)
chr2 (2-92)||(34895751-34895841)
chr2 (7-90)||(6518484-6518566)
chr2 (4-92)||(1750414-1750502)
chr2 (4-92)||(4764738-4764826)
chr2 (4-92)||(13780747-13780835)
chr2 (4-92)||(16096747-16096835)
chr2 (2-68)||(4451960-4452026)
chr2 (10-92)||(14285676-14285758)
chr2 (4-92)||(12302265-12302353)
chr2 (4-91)||(19047158-19047245)
chr2 (6-92)||(43335777-43335863)
chr2 (20-90)||(33229303-33229374)
chr2 (4-90)||(43490413-43490499)
chr2 (7-90)||(8896598-8896681)
chr2 (6-92)||(42026767-42026855)
chr2 (2-74)||(12531673-12531744)
[»] chr8 (28 HSPs)
chr8 (2-92)||(16603636-16603726)
chr8 (2-92)||(35181516-35181606)
chr8 (2-92)||(34304788-34304878)
chr8 (2-91)||(16358843-16358933)
chr8 (6-92)||(1375542-1375628)
chr8 (2-92)||(18066728-18066818)
chr8 (4-90)||(42295197-42295283)
chr8 (6-90)||(33630007-33630091)
chr8 (4-92)||(11582766-11582854)
chr8 (4-92)||(29705362-29705450)
chr8 (4-92)||(36743495-36743583)
chr8 (4-90)||(29800962-29801048)
chr8 (4-92)||(2165975-2166063)
chr8 (4-90)||(20148762-20148848)
chr8 (4-90)||(26125637-26125723)
chr8 (4-90)||(42699259-42699345)
chr8 (5-90)||(30912575-30912660)
chr8 (4-92)||(5754903-5754991)
chr8 (52-92)||(19386630-19386670)
chr8 (4-92)||(30660754-30660842)
chr8 (4-84)||(31384672-31384752)
chr8 (4-92)||(42197447-42197535)
chr8 (4-91)||(45397317-45397404)
chr8 (4-92)||(2546996-2547084)
chr8 (57-92)||(10678205-10678240)
chr8 (2-47)||(10678162-10678207)
chr8 (4-92)||(40528646-40528735)
chr8 (56-92)||(28977146-28977182)
[»] chr6 (18 HSPs)
chr6 (2-92)||(33242403-33242493)
chr6 (2-90)||(27441544-27441632)
chr6 (2-92)||(3213400-3213490)
chr6 (2-92)||(33253913-33254003)
chr6 (7-92)||(7273350-7273435)
chr6 (4-92)||(26670021-26670109)
chr6 (4-92)||(13743233-13743321)
chr6 (4-92)||(13748733-13748821)
chr6 (4-92)||(21293689-21293777)
chr6 (4-90)||(24203999-24204085)
chr6 (4-92)||(7292747-7292835)
chr6 (4-92)||(7367549-7367637)
chr6 (4-92)||(9698345-9698433)
chr6 (17-92)||(31109247-31109322)
chr6 (4-92)||(26466799-26466887)
chr6 (2-92)||(30014343-30014433)
chr6 (4-92)||(21279929-21280017)
chr6 (7-90)||(30735984-30736067)
[»] scaffold0003 (1 HSPs)
scaffold0003 (2-90)||(45729-45817)
[»] scaffold0100 (1 HSPs)
scaffold0100 (2-92)||(35466-35556)
[»] scaffold0119 (1 HSPs)
scaffold0119 (4-92)||(685-773)
[»] scaffold0385 (1 HSPs)
scaffold0385 (4-92)||(11251-11339)
[»] scaffold0038 (1 HSPs)
scaffold0038 (4-91)||(112656-112743)
[»] scaffold0187 (2 HSPs)
scaffold0187 (4-92)||(14200-14288)
scaffold0187 (4-92)||(24528-24616)
[»] scaffold0157 (1 HSPs)
scaffold0157 (7-92)||(23436-23521)


Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 2 - 314
Target Start/End: Original strand, 30622729 - 30623040
Alignment:
Q  2 tatggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttccnnnnnnnnc 101  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||| |||||||||||||||||||        |    
T  30622729 tatggttgtgagataaatttaccaaaatatccttaatgcatgggct-tacaatagggtgtatgattaaaggatgttcatgtaacattttccttttttttc 30622827  T
Q  102 taacaaaactatatatttgtcactgaaatacaatacaagtacatatattgttgttttcctggacagagtggacaacatgttgagttgtcaagaaaatgaa 201  Q
    |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30622828 taacaaaactatgtgtttgtcactgaaatacaatacaagtacatatattgttgttttcctggacagagtggacaacatgttgagttgtcaagaaaatgaa 30622927  T
Q  202 agagtacgagtagctaaaatcaagttctgtcatgaagcaacaataaaaacaaaacaatagatttggagataagaatctccaagtccccaacaaatcaaca 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30622928 agagtacgagtagctaaaatcaagttctgtcatgaagcaacaataaaaacaaaacaatagatttggagataagaatctccaagtccccaacaaatcaaca 30623027  T
Q  302 ataaggaaaatca 314  Q
    |||| ||||||||    
T  30623028 ataatgaaaatca 30623040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 17208164 - 17208074
Alignment:
Q  2 tatggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||    
T  17208164 tatggttgtgagatgaatttaccaaaatgtccttaatgcatggggtgtacaataaagtgtatgattaaagggtgttcacgtaacattttcc 17208074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 32473404 - 32473494
Alignment:
Q  2 tatggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||||| || |||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  32473404 tatggttgtgagatgaaattaccaaaatatccctaatgcatgtggtgtacaataaggtgtatgattaaagggtgttcatgtaacattttcc 32473494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 92
Target Start/End: Original strand, 41334675 - 41334763
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||| || |||||||||||||| |||| ||| |||| || ||| |||||||||| ||||||||||||||||||||||||||    
T  41334675 tggttgtgagatgaacttaccaaaatatccctaatacatagggtgtataatgaggtgtatgaataaagggtgttcatgtaacattttcc 41334763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 7617221 - 7617133
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||| || |||||||||||||| |||| |||||||| || |||   |||||||| ||||||||||||||||||||||||||    
T  7617221 tggttgtgagatgaacttaccaaaatatccctaatacatggggtgtataatggagtgtatgaataaagggtgttcatgtaacattttcc 7617133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 7 - 92
Target Start/End: Complemental strand, 38470664 - 38470579
Alignment:
Q  7 ttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||| || |||||||||||||||||||||| |||||||| ||||||    ||||||| ||||||||||| ||||||||||||||    
T  38470664 ttgtgaaatgaatttaccaaaatatccttaatacatggggtgtacaatggaatgtatgaataaagggtgtttatgtaacattttcc 38470579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 92
Target Start/End: Original strand, 2614661 - 2614749
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||| || |||||||||||||| |||| ||| |||| ||||||  | |||| || ||||||||||||||||||||||||||    
T  2614661 tggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcc 2614749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 22512393 - 22512305
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||| || |||||||||||||| |||| ||||| || ||||||   ||||| || ||||||||||||||||||||||||||    
T  22512393 tggttgtgagatgaacttaccaaaatatccctaatacatggagtgtacaatggagtgtaggaataaagggtgttcatgtaacattttcc 22512305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 5257083 - 5256997
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacatttt 90  Q
    |||||||||||| || |||||||||||||| |||| |||||||| ||||||  | ||||||| |||| |||||| ||||||||||||    
T  5257083 tggttgtgagatgaaattaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacatttt 5256997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 18034070 - 18033982
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||| || |||| ||||||||| |||| ||| |||| ||||||   ||||| || ||||||||||||||||||||||||||    
T  18034070 tggttgtgagatgaacttacaaaaatatccctaatacatagggtgtacaatggagtgtaggaataaagggtgttcatgtaacattttcc 18033982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 33801557 - 33801469
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||| || |||| ||||||||| |||| ||||| || ||||||  ||||||  | |||||| |||||||||||||||||||    
T  33801557 tggttgtgagatgaacttactaaaatatccctaatacatggagtgtacaatggggtgtagaaataaaggatgttcatgtaacattttcc 33801469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 33855071 - 33855143
Alignment:
Q  20 ttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||| | | |||| |||||||| ||||||  |||||| || ||||||||||||||||||||||||||    
T  33855071 ttaccaaaatgttcctaatacatggggtgtacaatggggtgtaggaataaagggtgttcatgtaacattttcc 33855143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 35 - 90
Target Start/End: Original strand, 25915030 - 25915085
Alignment:
Q  35 taatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacatttt 90  Q
    |||| ||| |||| |||||| ||||||| || ||||||||||||||||||||||||    
T  25915030 taatacattgggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 25915085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 7e-37; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 31513377 - 31513287
Alignment:
Q  2 tatggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  31513377 tatggttgtgagatgaatttaccaaaatatccttaatgcatggggtatacaatagggtgtatgattaaagagtgttcatgtaacattttcc 31513287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 2 - 91
Target Start/End: Original strand, 31408643 - 31408732
Alignment:
Q  2 tatggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttc 91  Q
    ||||||||||| || ||||||||||||||||||||||||||||| | |||||||  ||||||||||||||||||||||||||||||||||    
T  31408643 tatggttgtgaaatgaatttaccaaaatatccttaatgcatgggatgtacaatagagtgtatgattaaagggtgttcatgtaacattttc 31408732  T

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Target: chr7; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 40237010 - 40236919
Alignment:
Q  1 atatggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    ||||||||||||||| || |||||||||| ||| ||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||    
T  40237010 atatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaataggatgtatgattaaagggtgttcatgtaacattttcc 40236919  T

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Target: chr7; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 33384961 - 33384870
Alignment:
Q  2 tatggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaata-aggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||| ||||||||| ||||||||||||| ||| |||||||||| ||||||||||  |||||||||||||| | |||||||||||||||||||    
T  33384961 tatgtttgtgagatgaatttaccaaaatgtccctaatgcatggagtatacaataggggtgtatgattaaatgatgttcatgtaacattttcc 33384870  T

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Target: chr7; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 10573837 - 10573751
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacatttt 90  Q
    |||||||||||| ||||||||||||||| | |||| |||||||| ||||||| | ||||||| ||||||||||| ||||||||||||    
T  10573837 tggttgtgagatgaatttaccaaaatattcctaatacatggggtgtacaataggatgtatgaataaagggtgtttatgtaacatttt 10573751  T

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Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 92
Target Start/End: Original strand, 5194246 - 5194331
Alignment:
Q  7 ttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    ||||||||| |||||| ||||||||||||||  ||| |||| |||||| |||||||||| |||| |||||||||||||||||||||    
T  5194246 ttgtgagatgaatttatcaaaatatccttaaaacatagggtgtacaatgaggtgtatgaataaatggtgttcatgtaacattttcc 5194331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 35069809 - 35069721
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||| || |||||||||||||| |||| |||| ||| |||||| ||||||| || ||||| ||||||||||||||||||||    
T  35069809 tggttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatgaggtgtaggaataaagagtgttcatgtaacattttcc 35069721  T

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Target: chr7; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 6 - 92
Target Start/End: Original strand, 27535245 - 27535331
Alignment:
Q  6 gttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||| || |||||||||| || ||||  ||||| || |||||||  |||||||||||||||||||||||||||||||||||    
T  27535245 gttgtgagatgaaattaccaaaatgtctttaacacatggagtgtacaatagagtgtatgattaaagggtgttcatgtaacattttcc 27535331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 7 - 92
Target Start/End: Complemental strand, 43317528 - 43317443
Alignment:
Q  7 ttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    ||||||||| |||||| |||||||||| ||| |||| || | |||||| |||||||||| |||| |||||||||||||||||||||    
T  43317528 ttgtgagatgaatttatcaaaatatccctaaagcataggatgtacaatgaggtgtatgaataaatggtgttcatgtaacattttcc 43317443  T

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Target: chr7; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 90
Target Start/End: Original strand, 4638209 - 4638297
Alignment:
Q  2 tatggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacatttt 90  Q
    |||||||||||||| || |||||||||||||| ||||  ||||||| ||||||   |||||||| |||| |||||||||||||||||||    
T  4638209 tatggttgtgagatgaacttaccaaaatatccataatatatggggtgtacaattgagtgtatgaataaaaggtgttcatgtaacatttt 4638297  T

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Target: chr7; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 92
Target Start/End: Original strand, 24001024 - 24001112
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||| || |||||||||||||| |||| ||| |||| ||||||  | |||| || ||||||||||||||||||||||||||    
T  24001024 tggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcc 24001112  T

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Target: chr7; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 92
Target Start/End: Original strand, 42538443 - 42538531
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||| || |||||||||||||| |||| ||| |||| ||||||  | |||| || ||||||||||||||||||||||||||    
T  42538443 tggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcc 42538531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 41861764 - 41861674
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatc-ct-taatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    ||||||||||||||| ||||||||||||| || |||| ||| |||| || |||  ||||||||| ||||||||||||||||||||||||||    
T  41861764 tggttgtgagataaacttaccaaaatatctctataatacatagggtgtataattgggtgtatgaataaagggtgttcatgtaacattttcc 41861674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 7 - 92
Target Start/End: Original strand, 24280611 - 24280696
Alignment:
Q  7 ttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    ||||||||| |||||||||||||||   || |||||||| | || |||| ||||||||| ||||||||||||| ||||||||||||    
T  24280611 ttgtgagatgaatttaccaaaatatttctagtgcatgggatgtagaatagggtgtatgaataaagggtgttcacgtaacattttcc 24280696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 9216389 - 9216302
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||| || |||||||||||||  ||||||||||| | ||||||| | | || || ||||||||||||||||||||||||||    
T  9216389 tggttgtgagatgaacttaccaaaatatctctaatgcatggg-tgtacaataggatataggaataaagggtgttcatgtaacattttcc 9216302  T

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Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 39998475 - 39998408
Alignment:
Q  25 aaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    ||||||||| |||| |||||||| ||||||| | ||||||||||||  ||||||||||||||||||||    
T  39998475 aaaatatccctaatacatggggtgtacaataggatgtatgattaaaatgtgttcatgtaacattttcc 39998408  T

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Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 43343636 - 43343722
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacatttt 90  Q
    |||||||||||| || ||| |||||||||| |||| |||||||| ||||||| ||||||  | |||| | |||||||||||||||||    
T  43343636 tggttgtgagatgaacttatcaaaatatccctaatacatggggtgtacaatagggtgtagaaataaatgatgttcatgtaacatttt 43343722  T

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Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 44326266 - 44326180
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacatttt 90  Q
    |||||||||||| || |||||||||||||| ||||  ||| ||| ||||||  | ||||||| ||||||||||| ||||||||||||    
T  44326266 tggttgtgagatgaacttaccaaaatatccctaatatatgaggtgtacaatgggatgtatgaataaagggtgtttatgtaacatttt 44326180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 44416946 - 44417032
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacatttt 90  Q
    |||||||||||| || ||| |||||||||| |||| |||||||| ||||||| ||||||  | |||| | |||||||||||||||||    
T  44416946 tggttgtgagatgaacttatcaaaatatccctaatacatggggtgtacaatagggtgtagaaataaatgatgttcatgtaacatttt 44417032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 89
Target Start/End: Original strand, 26898414 - 26898499
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattt 89  Q
    ||||||| |||| || |||||||||||||| |||| |||||  | ||||||  ||||||||| |||| ||||||||||||||||||    
T  26898414 tggttgtaagatgaacttaccaaaatatccctaatacatggaatgtacaattgggtgtatgaataaaaggtgttcatgtaacattt 26898499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 5015483 - 5015395
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||| || |||||||||||||| |||| |||| ||| ||||||   |||||  | ||||| ||||||||||||||||||||    
T  5015483 tggttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatggagtgtagaaataaagagtgttcatgtaacattttcc 5015395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 4 - 92
Target Start/End: Original strand, 5810936 - 5811024
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||| || ||| |||||||||| ||||  || |||| ||||||  |||||| || ||||||||| ||||||||||||||||    
T  5810936 tggttgtgagatgaacttatcaaaatatccctaatatatagggtgtacaatggggtgtaggaataaagggtggtcatgtaacattttcc 5811024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 42972940 - 42972852
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||| || |||||||||||||| |||| |||| ||| ||||||   ||||| || |||||| |||||| ||||||||||||    
T  42972940 tggttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatggagtgtaggaataaaggatgttcaggtaacattttcc 42972852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 92
Target Start/End: Complemental strand, 45326105 - 45326020
Alignment:
Q  7 ttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    ||||||||| || |||||||||||||| ||||  ||||||| ||||||  | ||||||| |||| |||||| |||||||| |||||    
T  45326105 ttgtgagatgaacttaccaaaatatccctaatatatggggtgtacaatgtgatgtatgaataaaaggtgtttatgtaacactttcc 45326020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 83
Target Start/End: Original strand, 32029829 - 32029908
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgta 83  Q
    ||||||| |||| ||||||||||||||||| |||| |||||||| ||||||  |||||| || ||||  ||||| |||||    
T  32029829 tggttgttagatgaatttaccaaaatatccctaatacatggggtgtacaatggggtgtaggaataaaaagtgtttatgta 32029908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 16180369 - 16180454
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacatttt 90  Q
    |||||||||||| |||||||||||||||   |||| | |||||| ||||||  |||||| || |||| |||||| ||||||||||||    
T  16180369 tggttgtgagatgaatttaccaaaatatttataatacgtggggtgtacaat-gggtgtaggaataaatggtgttgatgtaacatttt 16180454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 7e-37; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 10457902 - 10457992
Alignment:
Q  2 tatggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||    
T  10457902 tatggttgtgagataaatttaccaaaatatccttaatgcatggggtgtacaatagggtgtatgattaaaaggtgttcatgtaacattttcc 10457992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 25996359 - 25996268
Alignment:
Q  1 atatggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    ||||||||||||||| ||||||||||||| ||||||||  ||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  25996359 atatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaataagatgtatgattaaagggtgttcatgtaacattttcc 25996268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 9434214 - 9434124
Alignment:
Q  2 tatggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||||| || |||||||||| ||| ||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||    
T  9434214 tatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagagtgtatgattaaagggtgttcatgtaacattttcc 9434124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 4190275 - 4190365
Alignment:
Q  2 tatggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||||| ||||||||||||||||  |||| |||  ||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  4190275 tatggttgtgagatgaatttaccaaaatatctctaatacataaggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 4190365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 52627987 - 52628077
Alignment:
Q  2 tatggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||| ||||||||| ||||||||||||||| ||||||||||| ||| ||||||| | ||||||||||||||||||||| ||||||||||||    
T  52627987 tatgattgtgagatgaatttaccaaaatatacttaatgcatgaggtgtacaataggatgtatgattaaagggtgttcacgtaacattttcc 52628077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 42100776 - 42100688
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||| || |||||||||||||| |||| |||||||| |||||| ||||||| || ||||||||||||||||||||||||||    
T  42100776 tggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgaggtgtaggaataaagggtgttcatgtaacattttcc 42100688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 34791919 - 34791829
Alignment:
Q  2 tatggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||||| || |||  ||||| ||| ||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  34791919 tatggttgtgagatgaaattattaaaatgtccctaatgcatgaggtttacaatatggtgtatgattaaagggtgttcatgtaacattttcc 34791829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 46941141 - 46941053
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||| || |||||||||||||| |||| |||||||| |||||| || |||| || ||||||||||||||||||||||||||    
T  46941141 tggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgagatgtaggaataaagggtgttcatgtaacattttcc 46941053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 51757683 - 51757593
Alignment:
Q  2 tatggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||||| || |||| ||||| ||| ||||||||| ||| ||||||| ||||||||||||||||||||| |||||| |||||||    
T  51757683 tatggttgtgagatgaaattactaaaatgtccataatgcatgaggtgtacaatagggtgtatgattaaagggtgtttatgtaatattttcc 51757593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 4 - 92
Target Start/End: Original strand, 45126940 - 45127028
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||| || |||||||||||||| |||| |||||||| ||||||  | ||||||| ||||||||||| ||||||||||||||    
T  45126940 tggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaagggtgtttatgtaacattttcc 45127028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 40808953 - 40808865
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||| || |||||||||||||| |||| |||||||| ||||||  |||||| || |||| |||||| ||||||||||||||    
T  40808953 tggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatggggtgtaggaataaatggtgttgatgtaacattttcc 40808865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 54237184 - 54237097
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttc 91  Q
    |||||||||||| || |||||||||||||| |||| ||| |||| ||||||  | |||| || |||||||||||||||||||||||||    
T  54237184 tggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttc 54237097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 92
Target Start/End: Original strand, 24688414 - 24688502
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||| || |||||||||||||| |||| ||| |||| ||||||   |||||  | ||||||||||||||||||||||||||    
T  24688414 tggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatggagtgtagaaataaagggtgttcatgtaacattttcc 24688502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 25413769 - 25413681
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||| || |||| ||||||||| |||| |||  ||| ||||||  |||||| || ||||||||||||||||||||||||||    
T  25413769 tggttgtgagatgaacttacaaaaatatccctaatacataaggtgtacaatggggtgtaggaataaagggtgttcatgtaacattttcc 25413681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 6 - 90
Target Start/End: Complemental strand, 27748649 - 27748565
Alignment:
Q  6 gttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacatttt 90  Q
    |||||||||| || |||||||||||||| |||| |||  ||| || ||| |||||||||| |||| |||||||||||||||||||    
T  27748649 gttgtgagatgaacttaccaaaatatccctaatacataaggtgtataatgaggtgtatgaataaaaggtgttcatgtaacatttt 27748565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 36150218 - 36150130
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||| || |||||||||||||| | || ||| |||| || |||  ||||||||| |||||||| |||||||||||||||||    
T  36150218 tggttgtgagatgaacttaccaaaatatccctgatacatagggtgtataatggggtgtatgaataaagggtattcatgtaacattttcc 36150130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 92
Target Start/End: Original strand, 47191038 - 47191125
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||| || ||| |||||||||  |||| |||||| | |||||| ||||||| || ||||||||||||||||||||||||||    
T  47191038 tggttgtgagatgaacttatcaaaatatctctaatacatggg-tgtacaatgaggtgtaggaataaagggtgttcatgtaacattttcc 47191125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 92
Target Start/End: Original strand, 54246160 - 54246248
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||| || |||| ||||||||  |||| ||| |||| ||||||  |||||| || ||||||||||||||||||||||||||    
T  54246160 tggttgtgagatgaacttacaaaaatatctctaatacatagggtgtacaatggggtgtaggaataaagggtgttcatgtaacattttcc 54246248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 40480837 - 40480750
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttc 91  Q
    |||||||||||| || |||||||||||||| |||| ||| || | ||||||  ||  ||||| |||||||||||||||||||||||||    
T  40480837 tggttgtgagatgaacttaccaaaatatccctaatacataggatgtacaatggggcatatgaataaagggtgttcatgtaacattttc 40480750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 42394431 - 42394518
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttc 91  Q
    |||||||||||| || |||||||||||||| |||| ||| |||| ||||||    |||| || |||||||||||||||||||||||||    
T  42394431 tggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatggaatgtaggaataaagggtgttcatgtaacattttc 42394518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 53273694 - 53273784
Alignment:
Q  2 tatggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||||| || |||||||||||||| |||| |||||| | |||||| |||| || || |||| | ||||||| |||||||||||    
T  53273694 tatggttgtgagatgaacttaccaaaatatccctaatacatgggatgtacaatgaggtataggaataaatgatgttcatataacattttcc 53273784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 43
Target Start/End: Complemental strand, 51249396 - 51249357
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatg 43  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  51249396 tggttgtgagatgaatttaccaaaatatccttaatgcatg 51249357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 53581870 - 53581956
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacatttt 90  Q
    |||||||||||| || ||| |||||||||| |||| ||| || | ||||||   |||||||| ||||| ||||||||||||||||||    
T  53581870 tggttgtgagatgaacttatcaaaatatccctaatacataggatgtacaatggagtgtatgaataaagagtgttcatgtaacatttt 53581956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 88
Target Start/End: Original strand, 29558249 - 29558330
Alignment:
Q  7 ttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacatt 88  Q
    ||||||||| |||||||||| |||| | ||||  || |||| |||||| || ||||||| |||||||||||||| |||||||    
T  29558249 ttgtgagatgaatttaccaatatattcctaatatatagggtgtacaatgagatgtatgaataaagggtgttcatataacatt 29558330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 7e-37; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 38336008 - 38335918
Alignment:
Q  2 tatggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  38336008 tatggttgtgagatgaatttaccaaaatatccttaatgcatgggatgtacaataaggtgtatgattaaagggtgttcatgtaacattttcc 38335918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 48119718 - 48119628
Alignment:
Q  2 tatggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  48119718 tatggttgtgagatgaatttaccaaaatatccttaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 48119628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 35003384 - 35003294
Alignment:
Q  2 tatggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  35003384 tatggttgtgagatgaatttaccaaaatatccttaatgtatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 35003294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 38113205 - 38113295
Alignment:
Q  2 tatggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||||| ||||||||||||| || |||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||    
T  38113205 tatggttgtgagatgaatttaccaaaatgtcattaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatataacattttcc 38113295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 44112767 - 44112677
Alignment:
Q  2 tatggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||||| || |||||||||| ||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  44112767 tatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 44112677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 46168473 - 46168383
Alignment:
Q  2 tatggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||||| |||||||||||||||||||||||||| |||| ||||||| | | ||||||||||||||||||||||||||||||||    
T  46168473 tatggttgtgagatgaatttaccaaaatatccttaatgcattgggtgtacaataggatatatgattaaagggtgttcatgtaacattttcc 46168383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 45639742 - 45639832
Alignment:
Q  2 tatggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||| ||||||||| ||||||||||||||||||||||| ||||||| ||||||| | ||||||||||||| ||||||||||||||||||||    
T  45639742 tatgattgtgagatgaatttaccaaaatatccttaatgtatggggtgtacaataggatgtatgattaaagagtgttcatgtaacattttcc 45639832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 41065243 - 41065153
Alignment:
Q  2 tatggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||||| || ||||||||||  || ||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||    
T  41065243 tatggttgtgagatgaaattaccaaaatgcccctaatgcatggggtgtacaacagggtgtatgattaaagggtgttcatgtaacattttcc 41065153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 37814866 - 37814778
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    ||||||||| || |||||||||||||||||||||| |||||||| |||||| || ||||||| ||||||||||| ||||||||||||||    
T  37814866 tggttgtgaaatgaatttaccaaaatatccttaatacatggggtgtacaatgagatgtatgaataaagggtgtttatgtaacattttcc 37814778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 4 - 92
Target Start/End: Original strand, 43571098 - 43571186
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||| || |||||||||||||| |||| |||||||| |||||| ||||||| || ||||||||||||||||||||||||||    
T  43571098 tggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgaggtgtaggaataaagggtgttcatgtaacattttcc 43571186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 35000123 - 35000213
Alignment:
Q  2 tatggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    ||||||||||||||||||||| |||||| ||| |||| ||||  ||||||||||  ||||||||||||| |||||||||||||||||||||    
T  35000123 tatggttgtgagataaatttatcaaaatgtccctaatacatgaagtatacaatagagtgtatgattaaaaggtgttcatgtaacattttcc 35000213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 45427755 - 45427845
Alignment:
Q  2 tatggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||||| || |||||||||| ||| |||||||||| || ||||||| |||||||||||||| ||| |||||||||||||||||    
T  45427755 tatggttgtgagatgaaattaccaaaatgtccctaatgcatggagtgtacaatagggtgtatgattaaaaggtattcatgtaacattttcc 45427845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 4 - 92
Target Start/End: Original strand, 23989535 - 23989624
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatg-attaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||||||||||||||||||||| |||| ||| |||||||||||   ||||||| || |||||||||||||||||||||||||    
T  23989535 tggttgtgagataaatttaccaaaatatccctaatacatagggtatacaattgagtgtatgaataaaagggtgttcatgtaacattttcc 23989624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 26585552 - 26585462
Alignment:
Q  2 tatggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||| ||| ||||| ||||||| ||||||||||||||||||||||| |||||||  ||||||||||||||  ||||||| |||||||||||    
T  26585552 tatgattgcgagatgaatttactaaaatatccttaatgcatggggtgtacaatatagtgtatgattaaagaatgttcatctaacattttcc 26585462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 45705915 - 45705825
Alignment:
Q  2 tatggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||||| |||||| |||||| ||| |||||||||| || |||||||   |||||||||||||||||||||| |||||||||||    
T  45705915 tatggttgtgagatgaatttatcaaaatgtccataatgcatggagtgtacaatagaatgtatgattaaagggtgttcatataacattttcc 45705825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 14427404 - 14427347
Alignment:
Q  35 taatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    ||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  14427404 taatgcatgaggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 14427347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 5489864 - 5489776
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||| || |||||||||||||| |||| ||| |||| ||||||  | |||| || ||||||||||||||||||||||||||    
T  5489864 tggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcc 5489776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 2497574 - 2497660
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacatttt 90  Q
    |||||||||||| || |||||||||||||||||||  ||||||| ||||||    ||||||| |||| |||||| ||||||||||||    
T  2497574 tggttgtgagatgaacttaccaaaatatccttaatatatggggtgtacaatggaatgtatgaataaatggtgtttatgtaacatttt 2497660  T

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Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 4 - 92
Target Start/End: Original strand, 48498974 - 48499062
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||| || |||||||||||||| |||| |||| ||| ||||||   |||||  | ||||| ||||||||||||||||||||    
T  48498974 tggttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatggagtgtagaaataaagagtgttcatgtaacattttcc 48499062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 92
Target Start/End: Original strand, 750317 - 750405
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    ||||| |||||| |||||| |||||||||| | || |||||||| ||||||  |||||| ||   ||||||||||| ||||||||||||    
T  750317 tggttttgagatgaatttatcaaaatatccctgatacatggggtgtacaatggggtgtaggaaataagggtgttcacgtaacattttcc 750405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 4401416 - 4401329
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatg-attaaagggtgttcatgtaacatttt 90  Q
    |||||||||||| || |||||||||||||  |||| |||||||| |||||| | ||||| | || |||| ||||||||||| ||||||    
T  4401416 tggttgtgagatgaacttaccaaaatatctctaatacatggggtgtacaatgaagtgtaggaataaaagagtgttcatgtatcatttt 4401329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 4888131 - 4888090
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggg 45  Q
    ||||||||||||||| |||||||||||||| |||| ||||||    
T  4888131 tggttgtgagataaacttaccaaaatatccctaatacatggg 4888090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 24769527 - 24769599
Alignment:
Q  20 ttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||||| |||| |||||||| ||||||   |||||  | |||| |||||||||| ||||||||||    
T  24769527 ttaccaaaatatccctaatacatggggtgtacaatggagtgtagaaataaaaggtgttcatgaaacattttcc 24769599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 17619162 - 17619252
Alignment:
Q  2 tatggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||    
T  17619162 tatggttgtgagatgaatttaccaaaatatccttaatgcatggggtgtacaatagggtgtatgattaaaaggtgttcatgtaacattttcc 17619252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 2 - 90
Target Start/End: Original strand, 3756256 - 3756344
Alignment:
Q  2 tatggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacatttt 90  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  3756256 tatgattgtgagataaatttactaaaatatccttaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 3756344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 712050 - 711960
Alignment:
Q  2 tatggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||| ||||||||| |||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  712050 tatgtttgtgagatgaatttaccaaaatatccttaatgcatagggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 711960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 55272386 - 55272476
Alignment:
Q  2 tatggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| |||||||  ||||||||||||||| |||||||||||||||||||    
T  55272386 tatggttgtgagatgaatttaccaaaatatccttaatgcatggggtgtacaatagagtgtatgattaaaggatgttcatgtaacattttcc 55272476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 35037096 - 35037007
Alignment:
Q  1 atatggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacatttt 90  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||  ||||||| |||||||||| ||||||||||||||    
T  35037096 atatggttgtgagatgaatttaccaaaatatccttaatgcatggggtgtacaatagagtgtatggttaaagggtgctcatgtaacatttt 35037007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 32728447 - 32728357
Alignment:
Q  2 tatggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||| ||||||||| ||||||| ||||| ||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||    
T  32728447 tatgattgtgagatgaatttactaaaatgtccttaatgcatggggtgtacaatagggtgtatgattaaaggatgttcatgtaacattttcc 32728357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 46827715 - 46827806
Alignment:
Q  1 atatggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    ||||| ||||||||||||||||||||||  | |||||||||| |||| |||||||  |||||||||||||||||||||||||||||||||||    
T  46827715 atatgtttgtgagataaatttaccaaaacgttcttaatgcattgggtgtacaatagagtgtatgattaaagggtgttcatgtaacattttcc 46827806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 28988561 - 28988473
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    ||||| |||||| |||||| |||||| ||| || |||||||||| |||||| |||||||||| ||||||||||||||||||||||||||    
T  28988561 tggttatgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaagggtgttcatgtaacattttcc 28988473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 33703229 - 33703141
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||| || |||||||||||||| |||| |||||||| ||||||||| ||||  | ||||||||||||||||||||||||||    
T  33703229 tggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaataagatgtagaaataaagggtgttcatgtaacattttcc 33703141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 48435589 - 48435679
Alignment:
Q  2 tatggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||| ||||||||| |||||||||| || ||| ||||||||||||| ||||||| ||||| |||||||| ||||||||||||||| |||||    
T  48435589 tatgattgtgagatgaatttaccaatatgtccctaatgcatggggtgtacaatagggtgtgtgattaaatggtgttcatgtaacactttcc 48435679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 960890 - 960970
Alignment:
Q  12 agataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||| ||||||||||||| ||| ||||| || |||| |||||||  |||||||||||||||||||||||||||||||||||    
T  960890 agatgaatttaccaaaatgtccctaatgtatagggtgtacaatagagtgtatgattaaagggtgttcatgtaacattttcc 960970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 49229684 - 49229764
Alignment:
Q  12 agataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||| ||||||||| |||||||||||||||||  || ||||||| |||||||||||||||| ||||||| |||||||||||    
T  49229684 agatgaatttaccagaatatccttaatgcatgaagtgtacaatagggtgtatgattaaaggatgttcatataacattttcc 49229764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 41878494 - 41878407
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttc 91  Q
    |||||||||||| || ||| |||||||||| ||||| || |||| |||||| |||||||||| ||||| |||||||||||||||||||    
T  41878494 tggttgtgagatgaacttatcaaaatatccctaatggatagggtgtacaatgaggtgtatgaataaagagtgttcatgtaacattttc 41878407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 92
Target Start/End: Original strand, 1771278 - 1771366
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||| || ||| |||||||||  |||| |||||||| ||||||  |||||| || ||||||||||||||||||||||||||    
T  1771278 tggttgtgagatgaacttatcaaaatatctctaatacatggggtgtacaatggggtgtaggaataaagggtgttcatgtaacattttcc 1771366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 92
Target Start/End: Original strand, 27316725 - 27316813
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    ||||| |||||| || ||||||||||||||||||| |||||||| || ||| ||||||| || |||||||||||| | |||||||||||    
T  27316725 tggttatgagatgaacttaccaaaatatccttaatacatggggtgtataatgaggtgtaggaataaagggtgttcgtttaacattttcc 27316813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 27864652 - 27864564
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||| || |||||||||||||| |||| |||||||| ||||||  | ||||||| |||| |||||| ||||||||||||||    
T  27864652 tggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacattttcc 27864564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 90
Target Start/End: Complemental strand, 38851603 - 38851515
Alignment:
Q  2 tatggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacatttt 90  Q
    |||||||||||||| |||||| |||||| ||| |||||||||| || |||| || | |||||||||||||| | |||||||||||||||    
T  38851603 tatggttgtgagatgaatttatcaaaatgtccataatgcatggagtgtacattatgatgtatgattaaaggatattcatgtaacatttt 38851515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 92
Target Start/End: Original strand, 55966358 - 55966446
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||| || |||||||||||||| |||| |||||| | ||||||  | ||||||| ||||||||||| ||||||||||||||    
T  55966358 tggttgtgagatgaacttaccaaaatatccctaatacatgggatgtacaatgggatgtatgaataaagggtgtttatgtaacattttcc 55966446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 5 - 92
Target Start/End: Original strand, 28982835 - 28982922
Alignment:
Q  5 ggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    ||||||||||| || |||||||||||||| ||||  ||||| | ||||||| ||||||  | ||||||||||||||||||||||||||    
T  28982835 ggttgtgagatgaacttaccaaaatatccctaatatatgggatgtacaatagggtgtagaaataaagggtgttcatgtaacattttcc 28982922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 27893854 - 27893940
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacatttt 90  Q
    |||||||||||| || |||||||||||||| |||| |||||||| ||||||  | ||||||| |||| |||||| ||||||||||||    
T  27893854 tggttgtgagatgaaattaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacatttt 27893940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 48463460 - 48463550
Alignment:
Q  2 tatggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||||| || |||||||||||||| |||| |||||| | |||||| |  ||||||| |||| |||||| ||||||||||||||    
T  48463460 tatggttgtgagatgaacttaccaaaatatccctaatacatgggatgtacaatgaaatgtatgaataaatggtgtttatgtaacattttcc 48463550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 35017820 - 35017733
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||| || |||||||||||||| || | |||||||| |||||| || | || || ||||||||||||||||||||||||||    
T  35017820 tggttgtgagatgaacttaccaaaatatcccta-tacatggggtgtacaatgagatataggaataaagggtgttcatgtaacattttcc 35017733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 43949813 - 43949900
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatg-attaaagggtgttcatgtaacatttt 90  Q
    |||||||||||| || |||||||||||||| |||| |||||||| |||||| ||||| | | || |||||||||||||||| ||||||    
T  43949813 tggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgaggtgcaggaataaaagggtgttcatgtatcatttt 43949900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 92
Target Start/End: Complemental strand, 25051778 - 25051693
Alignment:
Q  7 ttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    ||||||||| || |||||||||||||| |||| ||| |||| ||||||  |||||| || ||||| |||||||||| |||||||||    
T  25051778 ttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatggggtgtaggaataaagtgtgttcatgtgacattttcc 25051693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 23036068 - 23035980
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||| || |||| ||||||||| ||||  || |||| ||||||| |||||| || ||||||  ||||||||||||||||||    
T  23036068 tggttgtgagatgaacttacaaaaatatccctaatatatagggtgtacaatagggtgtaggaataaaggaggttcatgtaacattttcc 23035980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 27550397 - 27550309
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    ||||||| |||| || |||||||||||||| |||| |||| ||| ||||||   |||||  | ||||||||||||||||||||||||||    
T  27550397 tggttgtaagatgaacttaccaaaatatccctaatacatgaggtgtacaatggagtgtagaaataaagggtgttcatgtaacattttcc 27550309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 41848059 - 41847971
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||| ||| ||||| ||||||| ||  ||||||||||||| |||||| |||||| |||  ||||| ||||| |||||||||||||    
T  41848059 tggttgtgcgatgaatttgccaaaatgtctctaatgcatggggtgtacaatgaggtgtgtgaaaaaaggatgttcttgtaacattttcc 41847971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 39631189 - 39631102
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatg-attaaagggtgttcatgtaacatttt 90  Q
    |||||||||||| || |||||||||||||| |||| |||| ||| |||||| ||||||| | || |||||| ||||||||| ||||||    
T  39631189 tggttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatgaggtgtaggaataaaagggggttcatgtatcatttt 39631102  T

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Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 43514698 - 43514784
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacatttt 90  Q
    |||||||||||| || ||||||||||| || |||| ||||  || ||||||   ||||| || ||||||||||||||||||||||||    
T  43514698 tggttgtgagatgaacttaccaaaataaccctaatacatgaagtgtacaatggagtgtaggaataaagggtgttcatgtaacatttt 43514784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 92
Target Start/End: Original strand, 45490325 - 45490413
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||| ||||||| ||| ||||| |||| |||| ||| ||||||  | ||||| | ||||  ||||||||||||||||||||    
T  45490325 tggttgtgagatgaatttactaaagtatccctaatacatgaggtgtacaattggatgtataaataaaatgtgttcatgtaacattttcc 45490413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 57 - 92
Target Start/End: Original strand, 36004169 - 36004204
Alignment:
Q  57 ggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||||||||| |||||||||||||||||    
T  36004169 ggtgtatgattaaagggtattcatgtaacattttcc 36004204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 41327559 - 41327641
Alignment:
Q  8 tgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacatttt 90  Q
    |||||||| ||||||||||||| ||| || |||||  ||| ||||||  ||||| ||| ||||||||||  ||||||||||||    
T  41327559 tgtgagatgaatttaccaaaatgtccgtagtgcataaggtgtacaatggggtgtgtgaataaagggtgtctatgtaacatttt 41327641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 92
Target Start/End: Complemental strand, 12497041 - 12496956
Alignment:
Q  7 ttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||| |||| || |||||||||||||  |||| |||||| | ||||||   ||||| || |||||||||||||| |||||||||||    
T  12497041 ttgtaagatgaacttaccaaaatatctctaatacatgggatgtacaatggagtgtaggaataaagggtgttcatataacattttcc 12496956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 12415470 - 12415560
Alignment:
Q  2 tatggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    ||||||||||||||||| |||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  12415470 tatggttgtgagataaaattaccaaaatgtccctaatgcatggggtgtacaataaggtgtatgattaaagggtgttcatgtaacattttcc 12415560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 12427530 - 12427620
Alignment:
Q  2 tatggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    ||||||||||||||||| |||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  12427530 tatggttgtgagataaaattaccaaaatgtccctaatgcatggggtgtacaataaggtgtatgattaaagggtgttcatgtaacattttcc 12427620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 18491795 - 18491705
Alignment:
Q  2 tatggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||||| ||||||||||||| | ||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  18491795 tatggttgtgagatgaatttaccaaaatgttcttaatgcatgaggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 18491705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 43114647 - 43114557
Alignment:
Q  2 tatggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||||| || |||||||||| ||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  43114647 tatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 43114557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 966844 - 966934
Alignment:
Q  2 tatggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||| ||||||||| ||||||||||||  | ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  966844 tatgtttgtgagatgaatttaccaaaacgttcttaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 966934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 2 - 90
Target Start/End: Original strand, 11825664 - 11825752
Alignment:
Q  2 tatggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacatttt 90  Q
    |||| ||||||||| || |||||||||| ||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  11825664 tatgattgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 11825752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 2 - 90
Target Start/End: Original strand, 41281984 - 41282072
Alignment:
Q  2 tatggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacatttt 90  Q
    |||||||||||||| || ||| |||||| ||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  41281984 tatggttgtgagatgaaattatcaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 41282072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 16804058 - 16803968
Alignment:
Q  2 tatggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||||| || ||| |||||| ||| ||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||    
T  16804058 tatggttgtgagatgaaattatcaaaatgtccctaatgcatgggatgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 16803968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 16843340 - 16843250
Alignment:
Q  2 tatggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||||| || ||| |||||| ||| ||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||    
T  16843340 tatggttgtgagatgaaattatcaaaatgtccctaatgcatgggatgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 16843250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 2 - 90
Target Start/End: Original strand, 4299430 - 4299518
Alignment:
Q  2 tatggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacatttt 90  Q
    |||| ||||||||| ||||||||||||| || ||||||||||| || ||||||| |||||||||||||||||||||||| |||||||||    
T  4299430 tatgattgtgagatgaatttaccaaaatgtcattaatgcatggagtgtacaatagggtgtatgattaaagggtgttcatataacatttt 4299518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 30838720 - 30838632
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||| || |||||||||||||| |||| |||||||| ||||||||| ||||  | ||||||||||||||||||||||||||    
T  30838720 tggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaataagatgtagaaataaagggtgttcatgtaacattttcc 30838632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 34817788 - 34817875
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttc 91  Q
    |||||||||||| ||||||||||||| | | || |||||||||| |||||| |||||| ||| |||||||||||||||||||||||||    
T  34817788 tggttgtgagatgaatttaccaaaatgtgcgtagtgcatggggtgtacaatgaggtgtgtgaataaagggtgttcatgtaacattttc 34817875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 34895751 - 34895841
Alignment:
Q  2 tatggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||| ||||||||| |||||||||| || ||| ||||||||||||| ||||||| ||||| |||||||| ||||||||||||||| |||||    
T  34895751 tatgattgtgagatgaatttaccaatatgtccctaatgcatggggtgtacaatagggtgtgtgattaaatggtgttcatgtaacactttcc 34895841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 90
Target Start/End: Original strand, 6518484 - 6518566
Alignment:
Q  7 ttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacatttt 90  Q
    ||||||||| || |||||||||| ||| ||||||||||||| |||||||  ||||||||||||| |||||||||||||||||||    
T  6518484 ttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagagtgtatgattaaa-ggtgttcatgtaacatttt 6518566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 1750502 - 1750414
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||| || |||| ||||||||| |||| ||| |||| ||||||  |||||| || ||||||||||||||||||||||||||    
T  1750502 tggttgtgagatgaacttacaaaaatatccctaatacatagggtgtacaatggggtgtaggaataaagggtgttcatgtaacattttcc 1750414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 92
Target Start/End: Original strand, 4764738 - 4764826
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||| |||||||||||||||   |||| |||||||| ||||||| |||||| || |||| |||||| ||||||||||||||    
T  4764738 tggttgtgagatgaatttaccaaaatatttataatacatggggtgtacaatagggtgtaggaataaatggtgttgatgtaacattttcc 4764826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 92
Target Start/End: Original strand, 13780747 - 13780835
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||| |||||| |||||||||| ||||| ||||||| |||||| |||||| ||| ||||  ||||| ||||||||||||||    
T  13780747 tggttgtgagatgaatttatcaaaatatccctaatgtatggggtgtacaatgaggtgtgtgaataaaatgtgttgatgtaacattttcc 13780835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 16096835 - 16096747
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||| || | |||||||||||| |||| |||||||| || |||  |||||| || ||||||||||||||||||||||||||    
T  16096835 tggttgtgagattaactcaccaaaatatccctaatacatggggtgtataatggggtgtaggaataaagggtgttcatgtaacattttcc 16096747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 68
Target Start/End: Original strand, 4451960 - 4452026
Alignment:
Q  2 tatggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgatta 68  Q
    |||||||||||||| ||||||||||||||||| ||||||||  ||| ||||||||| ||||||||||    
T  4451960 tatggttgtgagatgaatttaccaaaatatccctaatgcatatggtgtacaataagatgtatgatta 4452026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 92
Target Start/End: Complemental strand, 14285758 - 14285676
Alignment:
Q  10 tgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||| |||||||||||||||| |||||  || |||| ||||||| |||||||||||||||||||||  ||||| |||||||    
T  14285758 tgagatgaatttaccaaaatatctttaatatatagggtgtacaatagggtgtatgattaaagggtgtttgtgtaatattttcc 14285676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 92
Target Start/End: Original strand, 12302265 - 12302353
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||| || |||| ||||||||| |||| ||| |||| ||||||  ||||||  | ||||||||||||||||||||||||||    
T  12302265 tggttgtgagatgaacttacaaaaatatccctaatacatagggtgtacaatggggtgtagaaataaagggtgttcatgtaacattttcc 12302353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 19047245 - 19047158
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttc 91  Q
    |||||||||||| || |||||||||||||| |||| ||| |||| ||||||    |||| || |||||||||||||||||||||||||    
T  19047245 tggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatggaatgtaggaataaagggtgttcatgtaacattttc 19047158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 6 - 92
Target Start/End: Original strand, 43335777 - 43335863
Alignment:
Q  6 gttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||| || |||||||||||||| |||| |||||| | |||||| ||||||| || |||| | ||||||| |||||||||||    
T  43335777 gttgtgagatgaacttaccaaaatatccctaatacatgggatgtacaatgaggtgtaggaataaatgatgttcatataacattttcc 43335863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 33229374 - 33229303
Alignment:
Q  20 ttaccaaaatatccttaatgcatggggtatacaataaggtgtatg-attaaagggtgttcatgtaacatttt 90  Q
    |||||||||||||| |||| |||||||| |||||| ||||||| | || |||||||||||||||| ||||||    
T  33229374 ttaccaaaatatccctaatacatggggtgtacaatgaggtgtaggaataaaagggtgttcatgtatcatttt 33229303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 43490413 - 43490499
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacatttt 90  Q
    ||||| |||||| || |||||||||||||| |||| ||| | || ||||||  | |||| || ||||||||||||||||||||||||    
T  43490413 tggttatgagatgaacttaccaaaatatccctaatacatagagtgtacaatgggatgtaggaataaagggtgttcatgtaacatttt 43490499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 90
Target Start/End: Original strand, 8896598 - 8896681
Alignment:
Q  7 ttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacatttt 90  Q
    ||||||||| ||||||||||||||| | || || || |||| ||||||    ||| ||| ||||||||||||||||||||||||    
T  8896598 ttgtgagatgaatttaccaaaatattcctattgtatagggtgtacaatggaatgtgtgaataaagggtgttcatgtaacatttt 8896681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 92
Target Start/End: Complemental strand, 42026855 - 42026767
Alignment:
Q  6 gttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaa--gggtgttcatgtaacattttcc 92  Q
    |||||||||| ||||| ||||||||||| ||||||  ||| | ||||||    ||||||| ||||  ||||||||||||||||||||||    
T  42026855 gttgtgagatgaatttgccaaaatatccctaatgcgcgggatgtacaatggaatgtatgaataaattgggtgttcatgtaacattttcc 42026767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 12531673 - 12531744
Alignment:
Q  2 tatggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggt 74  Q
    |||||||||||||| ||||||||||||   || |||||| || ||| ||||||  ||||||||||||||||||    
T  12531673 tatggttgtgagatgaatttaccaaaa-gcccataatgcttgaggtgtacaattgggtgtatgattaaagggt 12531744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 16603636 - 16603726
Alignment:
Q  2 tatggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||||| ||||||||||||| || |||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||    
T  16603636 tatggttgtgagatgaatttaccaaaatgtctttaatgcatggggtgtataataaggtgtatgattaaagggtgtgcatgtaacattttcc 16603726  T

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Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 35181606 - 35181516
Alignment:
Q  2 tatggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||||| || |||||||||| ||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  35181606 tatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 35181516  T

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Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 34304878 - 34304788
Alignment:
Q  2 tatggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||||| || |||||||||| ||| ||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||    
T  34304878 tatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaaggatgttcatgtaacattttcc 34304788  T

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Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 2 - 91
Target Start/End: Original strand, 16358843 - 16358933
Alignment:
Q  2 tatggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttc-atgtaacattttc 91  Q
    |||||||||||||| |||||| |||||||| ||||||||||||| | ||||||| |||||||||||||||||| ||| |||||||||||||    
T  16358843 tatggttgtgagatgaatttatcaaaatattcttaatgcatgggatgtacaatagggtgtatgattaaagggtcttcaatgtaacattttc 16358933  T

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Target: chr8; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 6 - 92
Target Start/End: Complemental strand, 1375628 - 1375542
Alignment:
Q  6 gttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||||||||||||||||||| ||||  ||||||| ||||||  ||||||||| |||| ||||||||||||| |||||||    
T  1375628 gttgtgagataaatttaccaaaatatccctaatatatggggtgtacaattgggtgtatgaataaaaggtgttcatgtaaaattttcc 1375542  T

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Target: chr8; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 18066728 - 18066818
Alignment:
Q  2 tatggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||||| || |||| ||||||||| |||| |||||| | |||||||   ||||||||||||||||||||||||||||||||||    
T  18066728 tatggttgtgagatgaaattactaaaatatccctaatacatgggatgtacaatagaatgtatgattaaagggtgttcatgtaacattttcc 18066818  T

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Target: chr8; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 42295283 - 42295197
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacatttt 90  Q
    |||||||||||| || |||||||||||||| |||| ||||| || |||||| ||||||| || ||||||||||||||||||||||||    
T  42295283 tggttgtgagatgaacttaccaaaatatccctaatacatggagtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 42295197  T

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Target: chr8; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 6 - 90
Target Start/End: Original strand, 33630007 - 33630091
Alignment:
Q  6 gttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacatttt 90  Q
    |||||||||| || |||| ||||| ||| |||||||| |||| |||||| ||||||||||||||||||||||| |||||||||||    
T  33630007 gttgtgagatgaaattactaaaatgtccctaatgcatagggtgtacaatgaggtgtatgattaaagggtgttcgtgtaacatttt 33630091  T

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Target: chr8; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 11582854 - 11582766
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||| || |||||||||||||| |||| ||| |||| ||||||  | |||| || ||||||||||||||||||||||||||    
T  11582854 tggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcc 11582766  T

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Target: chr8; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 29705450 - 29705362
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||| || ||| |||||||||| |||| |||||||| ||||||  ||||||  | ||||||||||||||||||||||||||    
T  29705450 tggttgtgagatgaacttatcaaaatatccctaatacatggggtgtacaatggggtgtagaaataaagggtgttcatgtaacattttcc 29705362  T

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Target: chr8; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 92
Target Start/End: Original strand, 36743495 - 36743583
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||| || |||||||||||||| |||| ||| |||| ||||||  | |||| || ||||||||||||||||||||||||||    
T  36743495 tggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcc 36743583  T

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Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 29800962 - 29801048
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacatttt 90  Q
    |||||||||||| || |||||||||||||| |||| |||||||| ||||||  | ||||||| |||| |||||| ||||||||||||    
T  29800962 tggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacatttt 29801048  T

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Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 92
Target Start/End: Original strand, 2165975 - 2166063
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    ||||| |||||| || |||||||||||||  |||| |||||||||||||||  |||||| || |||| ||||||||||||| |||||||    
T  2165975 tggttatgagatgaacttaccaaaatatctctaatacatggggtatacaatggggtgtaggaataaatggtgttcatgtaatattttcc 2166063  T

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Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 20148848 - 20148762
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacatttt 90  Q
    |||||||||||| || |||||||||||||| ||||  ||| ||| ||||||  | ||||||| ||||||||||| ||||||||||||    
T  20148848 tggttgtgagatgaacttaccaaaatatccctaatatatgaggtgtacaatgggatgtatgaataaagggtgtttatgtaacatttt 20148762  T

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Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 26125723 - 26125637
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacatttt 90  Q
    |||||||||||| || |||||||||||||| |||| ||| |||| ||||||    ||||||| ||||||||||| ||||||||||||    
T  26125723 tggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatggaatgtatgaataaagggtgtttatgtaacatttt 26125637  T

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Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 42699345 - 42699259
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacatttt 90  Q
    |||||||||||| || |||| ||||||||| |||| |||  ||| ||||||  |||||| || ||||||||||||||||||||||||    
T  42699345 tggttgtgagatgaacttacaaaaatatccataatacataaggtgtacaatggggtgtaggaataaagggtgttcatgtaacatttt 42699259  T

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Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 90
Target Start/End: Original strand, 30912575 - 30912660
Alignment:
Q  5 ggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacatttt 90  Q
    ||||||||||| || ||||||||||| || |||| ||||  || ||||||  |||||| || ||||||||||||||||||||||||    
T  30912575 ggttgtgagatgaacttaccaaaatacccctaatacatgaagtgtacaatggggtgtaggaataaagggtgttcatgtaacatttt 30912660  T

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Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 5754991 - 5754903
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||| || |||||||||||||| ||||  ||||| | ||||||  | |||| || |||| |||||||||||||||||||||    
T  5754991 tggttgtgagatgaacttaccaaaatatccctaatatatgggatgtacaatgggatgtaggaataaaaggtgttcatgtaacattttcc 5754903  T

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Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 52 - 92
Target Start/End: Original strand, 19386630 - 19386670
Alignment:
Q  52 aataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  19386630 aatagggtgtatgattaaagggtgttcatgtaacattttcc 19386670  T

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Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 4 - 92
Target Start/End: Original strand, 30660754 - 30660842
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    ||||||| |||| || |||||||||||||| |||| ||| |||| ||||||  | ||||  | ||||||||||||||||||||||||||    
T  30660754 tggttgtaagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtagaaataaagggtgttcatgtaacattttcc 30660842  T

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Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 4 - 84
Target Start/End: Complemental strand, 31384752 - 31384672
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaa 84  Q
    |||||||||||| || |||||||||||| | |||| |||||||| |||||||   |||| || ||||||||||||||||||    
T  31384752 tggttgtgagatgaacttaccaaaatattcctaatacatggggtgtacaatagaatgtaagaataaagggtgttcatgtaa 31384672  T

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Target: chr8; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 4 - 92
Target Start/End: Original strand, 42197447 - 42197535
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||| || |||||||||||||| |||| ||| | || | ||||  |||||| || |||| |||||||||||||||||||||    
T  42197447 tggttgtgagatgaacttaccaaaatatccctaatacatagtgtgtgcaatggggtgtaggaataaatggtgttcatgtaacattttcc 42197535  T

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Target: chr8; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 45397404 - 45397317
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttc 91  Q
    |||||||||||| || |||| ||||||||| |||| ||| |||| || |||  |||||| || ||||||||||||| |||||||||||    
T  45397404 tggttgtgagatgaacttacaaaaatatccctaatacatagggtgtagaatggggtgtaggaataaagggtgttcacgtaacattttc 45397317  T

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Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 2547084 - 2546996
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||| || |||| ||||||||| |||| |||| ||| ||||||   |||||  | ||||| ||||||||||||||||||||    
T  2547084 tggttgtgagatgaacttactaaaatatccctaatacatgaggtgtacaatggagtgtagaaataaagagtgttcatgtaacattttcc 2546996  T

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Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 57 - 92
Target Start/End: Original strand, 10678205 - 10678240
Alignment:
Q  57 ggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||||||||| |||||||||||||||||    
T  10678205 ggtgtatgattaaagggtattcatgtaacattttcc 10678240  T

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Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 10678162 - 10678207
Alignment:
Q  2 tatggttgtgagataaatttaccaaaatatccttaatgcatggggt 47  Q
    |||||||||||||| ||||||||||||| ||||||||  |||||||    
T  10678162 tatggttgtgagatgaatttaccaaaatgtccttaatatatggggt 10678207  T

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Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 92
Target Start/End: Original strand, 40528646 - 40528735
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatg-attaaagggtgttcatgtaacattttcc 92  Q
    ||||||||||||||||||| |||||| ||| ||||  ||||||| ||||||  ||| | || || ||||||||||||||||  |||||||    
T  40528646 tggttgtgagataaatttatcaaaatgtccctaatatatggggtgtacaatggggtttgtgaataaaagggtgttcatgtattattttcc 40528735  T

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Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 92
Target Start/End: Complemental strand, 28977182 - 28977146
Alignment:
Q  56 aggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    ||||||| || ||||||||||||||||||||||||||    
T  28977182 aggtgtaggaataaagggtgttcatgtaacattttcc 28977146  T

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Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 33242493 - 33242403
Alignment:
Q  2 tatggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||| ||||||||| ||||||||||||| |||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  33242493 tatgtttgtgagatgaatttaccaaaatgtccttaatacatggggtgtacaataaggtgtatgattaaatggtgttcatgtaacattttcc 33242403  T

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Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 90
Target Start/End: Complemental strand, 27441632 - 27441544
Alignment:
Q  2 tatggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacatttt 90  Q
    |||||||||||||| |||||||||||||||||||||| ||| || | ||||||| ||||||||||||||||||||||||||||||||||    
T  27441632 tatggttgtgagatgaatttaccaaaatatccttaatacataggatgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 27441544  T

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Target: chr6; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 3213490 - 3213400
Alignment:
Q  2 tatggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    ||||||||||| || |||||||||||||||||||||| |||||||| |||||| || ||||||| ||||||||||| ||||||||||||||    
T  3213490 tatggttgtgaaatgaatttaccaaaatatccttaatacatggggtgtacaatgagatgtatgaataaagggtgtttatgtaacattttcc 3213400  T

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Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 33254003 - 33253913
Alignment:
Q  2 tatggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||| ||||||||| |||||||||| || ||| ||||||||||||| ||||||| ||||| |||||||| |||||||||||||||||||||    
T  33254003 tatgattgtgagatgaatttaccaatatgtccctaatgcatggggtgtacaatagggtgtgtgattaaatggtgttcatgtaacattttcc 33253913  T

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Target: chr6; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 7 - 92
Target Start/End: Original strand, 7273350 - 7273435
Alignment:
Q  7 ttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    ||||||||| || |||||||||||||  |||| |||||||| |||||||||||||| || ||||||||||||||||||||||||||    
T  7273350 ttgtgagatgaacttaccaaaatatctctaatacatggggtgtacaataaggtgtaggaataaagggtgttcatgtaacattttcc 7273435  T

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Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 92
Target Start/End: Original strand, 26670021 - 26670109
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||| || |||||||||||||| |||| |||| ||| |||||| ||||||| || ||||||||||||||||||||||||||    
T  26670021 tggttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacattttcc 26670109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 4 - 92
Target Start/End: Original strand, 13743233 - 13743321
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||| || |||||||||||||| |||| |||||||| ||||||  | ||||||| |||| |||||||||||||||||||||    
T  13743233 tggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaattggatgtatgaataaaaggtgttcatgtaacattttcc 13743321  T

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Target: chr6; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 4 - 92
Target Start/End: Original strand, 13748733 - 13748821
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||| || |||||||||||||| |||| |||||||| ||||||  | ||||||| |||| |||||||||||||||||||||    
T  13748733 tggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaattggatgtatgaataaaaggtgttcatgtaacattttcc 13748821  T

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Target: chr6; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 4 - 92
Target Start/End: Original strand, 21293689 - 21293777
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    ||||||||| || |||||||||||||||||||||| |||||||| |||| | |  ||||||| ||||||||||| ||||||||||||||    
T  21293689 tggttgtgaaatgaatttaccaaaatatccttaatacatggggtgtacagtgaaatgtatgaataaagggtgtttatgtaacattttcc 21293777  T

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Target: chr6; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 24203999 - 24204085
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacatttt 90  Q
    |||||||||||| || |||||||||||||| |||| ||||| || ||||||| |||||| || |||| |||||||||||||||||||    
T  24203999 tggttgtgagatgaacttaccaaaatatccctaatacatggagtgtacaatagggtgtaggaataaatggtgttcatgtaacatttt 24204085  T

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Target: chr6; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 7292835 - 7292747
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||| || |||||||||||||| |||| ||| |||| || ||| |||||||||| |||| ||||||| |||||||||||||    
T  7292835 tggttgtgagatgaacttaccaaaatatccctaatacatagggtgtataatgaggtgtatgaataaatggtgttcttgtaacattttcc 7292747  T

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Target: chr6; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 7367637 - 7367549
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||| || |||||||||||||| |||| |||||| | |||||| |||||||||| |||| | ||||||| |||||||||||    
T  7367637 tggttgtgagatgaacttaccaaaatatccctaatacatgggatgtacaatgaggtgtatgaataaatgatgttcatataacattttcc 7367549  T

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Target: chr6; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 92
Target Start/End: Original strand, 9698345 - 9698433
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||| || |||||||||||||| |||| ||| |||| ||||||  | |||| || ||||||||||||||||||||||||||    
T  9698345 tggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcc 9698433  T

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Target: chr6; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 31109247 - 31109322
Alignment:
Q  17 aatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||| |||||||||| || |||||||||| || |||  | ||||||||||||||||||||||||||||||||||    
T  31109247 aatttatcaaaatatccctagtgcatggggtgtataatgggatgtatgattaaagggtgttcatgtaacattttcc 31109322  T

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Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 26466887 - 26466799
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||| || ||||||||||| || |||| ||||| || ||||||  |||||| || ||||||||||| ||||||||||||||    
T  26466887 tggttgtgagatgaacttaccaaaataaccctaatacatggagtgtacaatggggtgtaggaataaagggtgtttatgtaacattttcc 26466799  T

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Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 30014433 - 30014343
Alignment:
Q  2 tatggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||||| || |||||||||||| | |||| |||||| | || |||  | |||| || ||||||||||||||||||||||||||    
T  30014433 tatggttgtgagatgaacttaccaaaatatgcctaatacatgggatgtataatgggatgtaggaataaagggtgttcatgtaacattttcc 30014343  T

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Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 21280017 - 21279929
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||| ||||||||||||||||| |||| |||||| | | ||||    ||||  | ||||||||||||||||||||||||||    
T  21280017 tggttgtgagatgaatttaccaaaatatccctaatacatgggatgtgcaatggaatgtagaaataaagggtgttcatgtaacattttcc 21279929  T

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Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 90
Target Start/End: Complemental strand, 30736067 - 30735984
Alignment:
Q  7 ttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacatttt 90  Q
    ||||||||| || |||||||||||||  |||| |||| ||| ||||||  |||||| || ||||  ||||||||||||||||||    
T  30736067 ttgtgagatgaacttaccaaaatatcactaatacatgaggtgtacaatggggtgtaggaataaaaagtgttcatgtaacatttt 30735984  T

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Target: scaffold0003 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 90
Target Start/End: Original strand, 45729 - 45817
Alignment:
Q  2 tatggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacatttt 90  Q
    |||||||||||||| |||||||||||||||||||||| ||| || | ||||||| ||||||||||||||||||||||||||||||||||    
T  45729 tatggttgtgagatgaatttaccaaaatatccttaatacataggatgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 45817  T

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Target: scaffold0100 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 35466 - 35556
Alignment:
Q  2 tatggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||||| |||||||||| || ||| ||||||||||||| ||||||| |||||||||||||| |||||| ||||||||||||||    
T  35466 tatggttgtgagatgaatttaccaatatgtccctaatgcatggggtgtacaatatggtgtatgattaaatggtgtttatgtaacattttcc 35556  T

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Target: scaffold0119 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 773 - 685
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||| || |||||||||||||| |||| |||| ||| |||||| ||||||| || ||||||||||||||||||||||||||    
T  773 tggttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacattttcc 685  T

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Target: scaffold0385 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 11339 - 11251
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||| || |||||||||||||| ||||  ||||||| ||||||  ||||||||| ||||| |||||||||| |||||||||    
T  11339 tggttgtgagatgaacttaccaaaatatccctaatatatggggtgtacaatggggtgtatgaataaagtgtgttcatgtgacattttcc 11251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 112743 - 112656
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttc 91  Q
    |||||||||||| || |||||||||||||| |||| ||| |||| ||||||    |||| || |||||||||||||||||||||||||    
T  112743 tggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatggaatgtaggaataaagggtgttcatgtaacattttc 112656  T

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Target: scaffold0187 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 4 - 92
Target Start/End: Original strand, 14200 - 14288
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||| || |||| ||||||||| |||| ||| || | ||||||  ||||||  | ||||||||||||||||||||||||||    
T  14200 tggttgtgagatgaacttacaaaaatatccctaatacataggatgtacaatggggtgtagaaataaagggtgttcatgtaacattttcc 14288  T

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Target: scaffold0187; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 4 - 92
Target Start/End: Original strand, 24528 - 24616
Alignment:
Q  4 tggttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||||||||||| || |||| ||||||||| |||| ||| || | ||||||  ||||||  | ||||||||||||||||||||||||||    
T  24528 tggttgtgagatgaacttacaaaaatatccctaatacataggatgtacaatggggtgtagaaataaagggtgttcatgtaacattttcc 24616  T

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Target: scaffold0157 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 92
Target Start/End: Original strand, 23436 - 23521
Alignment:
Q  7 ttgtgagataaatttaccaaaatatccttaatgcatggggtatacaataaggtgtatgattaaagggtgttcatgtaacattttcc 92  Q
    |||| |||| || |||||||||||||  |||| |||||| | ||||||   ||||| || |||||||||||||| |||||||||||    
T  23436 ttgtaagatgaacttaccaaaatatctctaatacatgggatgtacaatggagtgtaggaataaagggtgttcatataacattttcc 23521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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