View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10667_low_9 (Length: 277)
Name: NF10667_low_9
Description: NF10667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10667_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 16 - 259
Target Start/End: Complemental strand, 4247906 - 4247663
Alignment:
| Q |
16 |
acagagcaattaccaagcactgcaggacatatagaccaagcagagatcggaacttctcccttgcagcatcatcatcctgttaagtgaaaaaatgtcggca |
115 |
Q |
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| T |
4247906 |
acagagcaattaccaagcactgcaggacatatagaccaagcagagatcggaacttctcccttgcagcatcctcatcctgttaagtgaaaaaatgtcggca |
4247807 |
T |
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| Q |
116 |
aaaaattgaaaatataacaataatttatgttctcccaacaaaggaaaagatgaaatgttttataatagacagaccaccaacttatcgcaaacttcatata |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4247806 |
aaaaattgaaaatataacaataatttatgttctcccaacaaatgaaaagatgaaatgttttataatagacagaccaccaacttatcgcaaacttcatata |
4247707 |
T |
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| Q |
216 |
tagaatttgcaatctcaacagctcggtcaaagacattatcgagt |
259 |
Q |
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| T |
4247706 |
tagaatttgcaatctcaacagctcggtcaaagacattatcgagt |
4247663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 16 - 130
Target Start/End: Complemental strand, 2798561 - 2798447
Alignment:
| Q |
16 |
acagagcaattaccaagcactgcaggacatatagaccaagcagagatcggaacttctcccttgcagcatcatcatcctgttaagtgaaaaaatgtcggca |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2798561 |
acagagcaattaccaagcactgcaggacatatagaccaagcagagatcggaacttctcccttgcagcatcatcatcctgttaagtgaaaaaatgtcggca |
2798462 |
T |
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| Q |
116 |
aaaaattgaaaatat |
130 |
Q |
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| T |
2798461 |
aaaaattgaaaatat |
2798447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 2402166 - 2402401
Alignment:
| Q |
18 |
agagcaattaccaagcactgcaggacatatagaccaagcagagatcggaacttctcccttgcagcatcatcatcctgt-taagtgaaaaaatgtcggcaa |
116 |
Q |
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||||||| ||||||||| ||||||||||||||| |||| | || ||||| ||||| |||||| ||| ||| | || |||||||||||||||| |||| |
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| T |
2402166 |
agagcaactaccaagcattgcaggacatatagatcaagaacagctcggagtttctctcttgcaacattatcctgtcgtataagtgaaaaaatgtcagcaa |
2402265 |
T |
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| Q |
117 |
aaaa-ttgaaaatataacaataatttatgttctcccaacaaaggaaaagatgaaatgttttataatagacagaccaccaacttatcgcaaacttcatata |
215 |
Q |
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|||| |||||||| | ||||||||||||||||| || |||| ||| |||||||||||||| ||||| |||||||||||||| |||||||||||||| |
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| T |
2402266 |
aaaagttgaaaatcaatcaataatttatgttctcataaaaaagaaaaggatgaaatgttttaaaataggaagaccaccaacttactgcaaacttcatata |
2402365 |
T |
|
| Q |
216 |
tagaatttgcaatctcaacagctcggtcaaagacat |
251 |
Q |
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||||||||| ||||||||||| || ||||||||||| |
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| T |
2402366 |
tagaatttgaaatctcaacagttctgtcaaagacat |
2402401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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