View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10668_10 (Length: 300)
Name: NF10668_10
Description: NF10668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10668_10 |
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| [»] chr1 (6 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 6969038 - 6969337
Alignment:
| Q |
1 |
gaaagccaagaaagaagcagagatgaaggctgagtgagaagaagggacaggtgaagagggttcatcagagaaggaggcagaagatgcagaaggctgaaaa |
100 |
Q |
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| T |
6969038 |
gaaagccaagaaagaagcagagatgaaggctgagaaagaagaagggacaggtgaagagggttcatcagagaaggaggcagaagatgcagaaggctgaaaa |
6969137 |
T |
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| Q |
101 |
ttcctaggcaatattgctagttattttatattagagtcttattaaaacattactatgaatctctatttctatgcttacattagagtcttaatttacttta |
200 |
Q |
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| T |
6969138 |
ttcctaggcaatattgctagttattttatattagagtcttattaaaacattagtatgaatctctatttctatgcttacattcgagtcttaatttacttta |
6969237 |
T |
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| Q |
201 |
ttataagttagattaatatgctaaggttgaaacattgttggtgattatgctgaattacaaactaaacaatgtacttcaggccttataacaaagtaggttg |
300 |
Q |
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| T |
6969238 |
ttataagttagattaatatgctaaggttgaaacattgttggtgattatgctgaattacaaactaaacaatgtacttcaggccttataacaaagtaggttg |
6969337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 102 - 224
Target Start/End: Complemental strand, 1000088 - 999959
Alignment:
| Q |
102 |
tcctaggcaatattgctagttattttatatt--agagtcttattaaaa------cattactatgaatctctatttctatgcttacattagagtcttaatt |
193 |
Q |
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| T |
1000088 |
tcctaggcaatattgctggttattttatattttagggtcttattaaaattaaaacattagtat-agtatctatttctatgcttacattagtgtcttgatt |
999990 |
T |
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| Q |
194 |
tactttattataagttagattaatatgctaa |
224 |
Q |
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| T |
999989 |
tacattaatataagttagattaatgtgctaa |
999959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 130 - 219
Target Start/End: Original strand, 2178425 - 2178513
Alignment:
| Q |
130 |
attagagtcttattaaaacattactatgaatctctatttctatgcttacattagagtcttaatttactttattataagttagattaatat |
219 |
Q |
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| T |
2178425 |
attagagtcgtattaaaacattagtatgaatatctatttccatgcttacattacattcttattttagattattat-agttagattaatat |
2178513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 1000221 - 1000130
Alignment:
| Q |
1 |
gaaagccaagaaagaagcagagatgaaggctgagtgagaagaagggacaggtgaagagggttcatcagagaaggaggcagaagatgcagaag |
92 |
Q |
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| T |
1000221 |
gaaagctaagaaagaagcagagatgaaggttgagaaagaaaaggggactagtgaagaggattcactagaggaggaggcagaagatgcagaag |
1000130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 196
Target Start/End: Complemental strand, 51315915 - 51315840
Alignment:
| Q |
121 |
ttattttatattagagtcttattaaaacattactatgaatctctatttctatgcttacattagagtcttaatttac |
196 |
Q |
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| T |
51315915 |
ttattttgcattagagtcttatgaaaacgttaatatgaatatctatttccatgtttacaatagagtcttattttac |
51315840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 51316030 - 51315982
Alignment:
| Q |
37 |
agaagaagggacaggtgaagagggttcatcagagaaggaggcagaagat |
85 |
Q |
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| T |
51316030 |
agaagaagggactagtggagaggattcatcagagaaggaggcagaagat |
51315982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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