View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10668_3 (Length: 536)
Name: NF10668_3
Description: NF10668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10668_3 |
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Alignment Details
Target: chr2 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 16 - 516
Target Start/End: Original strand, 38419081 - 38419565
Alignment:
| Q |
16 |
attattgtttattagaagttcaccaaagaaaattcaactagcaatagtatagatgactggggttatttacnnnnnnnnnnnnnnnnnatggatcagcttc |
115 |
Q |
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| T |
38419081 |
attattgcttattagaagttcaccaaagaaaattcaactagcaatagtatagatggctggggttatttacttttt------------atggatcagcttc |
38419168 |
T |
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| Q |
116 |
taatttgtgatgaatctcaagtgaaattatgagaagagaaatgccagcaataaacatttcagcatacacttttcaacacaatctctaaaaactagtgaaa |
215 |
Q |
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| T |
38419169 |
taatttgtgatgaatctcaagtgaaattatgagaagagaaatgccagcaacaaacatttcaccatacatttttcaacacaatctctaaaaactagtgaaa |
38419268 |
T |
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| Q |
216 |
gagagaaaattgattaagagggaaaagatgttattggaagttttgtatttattataatttgcaatagaatgcatctcttatatacacaatgcaaaactta |
315 |
Q |
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| T |
38419269 |
gagagaaaattgattaagagg-aaaagatgttattggaagttttgtatttat---aatttgcaatacaatgcatctcttatatacacaatgcaaaactta |
38419364 |
T |
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| Q |
316 |
acaaacttcctaagaaatttcaacaaaattaaccaaagaaaacagataacttgtgatgcaagtaatcatcaactaagatgaattattttgaaattaatta |
415 |
Q |
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| T |
38419365 |
acaaacttcctaagaaatttcaacaaaattaaccaaagaaaacagataacttgtgatgcaagtaatcatcaactaagatgaattattttgaaattaatta |
38419464 |
T |
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| Q |
416 |
ggtttttgagacaaagtacgccattgtctctcaaatactcagatacggtgaagtatgcctgatgcaaggcgatcaagtgccttgtctcaaatactcagat |
515 |
Q |
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| T |
38419465 |
ggtttttgagacaaagtacgccattgtctctcaaatactcagatacggtgaagtatgcctgatgcaaggcgatcaagtgccttgtctcaaatactcagat |
38419564 |
T |
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