View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10668_5 (Length: 393)
Name: NF10668_5
Description: NF10668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10668_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 15 - 381
Target Start/End: Original strand, 36693693 - 36694057
Alignment:
| Q |
15 |
cccacagttttgttttgatcatggaccttaggtttgtggcataaatcttagatgttgcaatgtgagtttctgctgaggttggtggaaccattttgtggat |
114 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
36693693 |
cccacaattttgttttgatcatggaccttaggtttgtggcataaatcttagatgttgcaatgtgagtttctgctgaggttggtggagccattttgtggat |
36693792 |
T |
|
| Q |
115 |
tgatattgataattgctttaaagcttttccagtttccatgctcatcttaatgcatggttcttgtattttgcttttgatttcctttagtgtctatnnnnnn |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
36693793 |
tgatattgataattgctttaaagcttttccagtttccatgctcatcttaatgcatggttcttgtattttgcttttgatttcctttggtgtctataaaaaa |
36693892 |
T |
|
| Q |
215 |
ngtttaacatattaaaaaataagtcattaatttctccaagaaatactaaactttacaataaaaatatatcatgtcaattagtaccttagtgaagttgtta |
314 |
Q |
| |
|
|| ||||||||||||| ||||||||||||||||| ||| ||||||| |||||| |||||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
36693893 |
agtgtaacatattaaaatataagtcattaatttctacaaaaaatactgaactttgcaataaaa--atatcatgttaattagtaccttagtgaagttgtta |
36693990 |
T |
|
| Q |
315 |
aggaagccatttagggcatcaatccgatatgcacattgccttgataggtttccaatcttttgatatt |
381 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36693991 |
aggaaaccattaagggcatcaatccgatatgcacattgccttgataggtttccaatcttttgatatt |
36694057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University