View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10668_6 (Length: 314)
Name: NF10668_6
Description: NF10668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10668_6 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 51273915 - 51274120
Alignment:
| Q |
1 |
gcttgtttctctgcaagaaaaccacacgtggtagagtctaccatgtatgcaacatcctcacaaaagattggatcaaacttccactccctccaccgccggg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51273915 |
gcttgtttctctgcaagaaaaccacacgtggtagagtctaccatgtatgcaacatcctcacaaaagattggatcaaacttccactccctccaccgccggg |
51274014 |
T |
|
| Q |
101 |
aaccggtcacaataaacgtgaccgtgtactcgaaggccttgtttgtgaaccttattatagcatcggagaaagcacaaagaaagtatctttcaaccatcac |
200 |
Q |
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|||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51274015 |
aaccggtcacaataaacgtgaccgtgtactagaaggctttgtttgtgaaccttattatagcatcggagaaagcacaaagaaagtatctttcaaccatcac |
51274114 |
T |
|
| Q |
201 |
aggttc |
206 |
Q |
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|||||| |
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| T |
51274115 |
aggttc |
51274120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 14907944 - 14908094
Alignment:
| Q |
1 |
gcttgtttctctgcaagaaaaccacacgtggtagagtctaccatgtatgcaacatcctcacaaaagattggatcaaacttccactccctccaccgccggg |
100 |
Q |
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|||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||| | |
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| T |
14907944 |
gcttgtttctgtgcaagaaaaccacacgtagtagagtctaccatgtctgcaacatcctcacaaaagataggatcaaatttccactccctccaccgctacg |
14908043 |
T |
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| Q |
101 |
aaccggtcacaataaacgtgaccgtgtactcgaaggccttgtttgtgaacc |
151 |
Q |
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| T |
14908044 |
aaccagtcataatgagcgtgaccgtgtacatgaaggctttgtttgcgaacc |
14908094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 214 - 294
Target Start/End: Original strand, 51054026 - 51054106
Alignment:
| Q |
214 |
tcactggtgactgaaaatccaaatgcatttgcgccggaggtggcaaatacgacggtgtcggaggtcgtggaatggtttttg |
294 |
Q |
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| T |
51054026 |
tcactggtgactgaaaatccaaatgcatttgcgccggaggtggcaaatacgacggtgtcggaggtcgtggaatggtttttg |
51054106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 52 - 206
Target Start/End: Complemental strand, 5051458 - 5051299
Alignment:
| Q |
52 |
acatcctcacaaaagattggatcaaacttccactccctccaccgccgggaaccggtcacaa-taaacgtgaccgtgtactcgaaggccttgtttgtgaac |
150 |
Q |
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|||||||| | |||||||||||||||||||||||||||||| || || ||||||||| || ||||||||||||||||||||||||| | ||||| |||| |
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| T |
5051458 |
acatcctcgcgaaagattggatcaaacttccactccctccatagctggaaaccggtcagaaataaacgtgaccgtgtactcgaaggcttcgtttgcgaac |
5051359 |
T |
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| Q |
151 |
ctta-----ttatagcatcggagaaagcacaaagaaagtatctttcaaccatcacaggttc |
206 |
Q |
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|||| ||||||||| | | || |||||| ||||||||||||||||||||||||||| |
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| T |
5051358 |
cttattattttatagcattgatggaaacacaaa-aaagtatctttcaaccatcacaggttc |
5051299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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