View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10668_9 (Length: 306)
Name: NF10668_9
Description: NF10668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10668_9 |
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Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 37704455 - 37704716
Alignment:
| Q |
1 |
ccaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacatt |
100 |
Q |
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| T |
37704455 |
ccaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacatt |
37704554 |
T |
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| Q |
101 |
tggcaacaatattaattcagtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagaccagactttttgaacgtaattagcacg |
200 |
Q |
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| T |
37704555 |
tggcaacaatattaattcagtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagaccagactttttgaacgtaattagcacg |
37704654 |
T |
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| Q |
201 |
aaagttggaatcttatttcaagttgtgataagataacaaattcatttaagtagcaatcacag |
262 |
Q |
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| T |
37704655 |
aaagttggaatcttatttcaagttgtgataagataacaaattcatttaagtagcaatcacag |
37704716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 37698974 - 37699238
Alignment:
| Q |
1 |
ccaaaaaggttgacttattagattgtttgcaaa--ttgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgaca |
98 |
Q |
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| T |
37698974 |
ccaaaaagtttgagttattagattgtttacaaacattgagtctaggtattcccttattttgtgttgggggtgcttttcataaccgtatactgatatgaca |
37699073 |
T |
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| Q |
99 |
tttggcaacaatattaattcagtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagacc-agactttttgaacgtaattagc |
197 |
Q |
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| T |
37699074 |
tttggcaacaatattaattcagtaacaatcatagaaaagtttggtgttcattaaactaaataacatcttggaaaaccaagacttttcgaacgtaattagc |
37699173 |
T |
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| Q |
198 |
acgaaagttggaatcttatttcaagttgtg---ataagataacaaattcatttaagtagcaatca |
259 |
Q |
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| T |
37699174 |
actaaagttggaatcttattgcaagttgtgataataagataacaaattcatttaagtagcaatca |
37699238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 37437521 - 37437778
Alignment:
| Q |
1 |
ccaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacatt |
100 |
Q |
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| T |
37437521 |
ccaaaaagtctgacttattagattgtttacaaattcagtctagctattcccttgttttaatgtgggg-tgcttttcataaccgtatagtgatatgacaat |
37437619 |
T |
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| Q |
101 |
tggcaacaatattaattcagtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagacc-agactttttgaacgtaattagcac |
199 |
Q |
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| T |
37437620 |
tggcaacaatattaattcaataacaatcatagaaaagtttggtgttcattaaactaaataacatattggaagaccaagacttttcgaacgtaattagc-- |
37437717 |
T |
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| Q |
200 |
gaaagttggaatcttatttcaagttgtg---ataagataacaaattcatttaagtagcaatca |
259 |
Q |
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| T |
37437718 |
--aagttggaatcttattgcaagttgtgataataagataacaaattcatttaagtagcaatca |
37437778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 37698637 - 37698864
Alignment:
| Q |
1 |
ccaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacatt |
100 |
Q |
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| T |
37698637 |
ccaaaaagtttgacttattagattgtttacaaattgagtctaagtattcccttattttgttg-----------------accgtatagtgatatgacaat |
37698719 |
T |
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| Q |
101 |
tggcaacaatattaattcagtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagacca-gactttttgaacgtaatta---- |
195 |
Q |
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| T |
37698720 |
tggcaacaatattaa--------caatcatacaaaagtttggtgttcgttaaactaaataacatcttggaagaccaagacttttttaacgtaattaatta |
37698811 |
T |
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| Q |
196 |
gcacgaaagttggaatcttatttcaagttgtgataagataacaaattcattta |
248 |
Q |
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| T |
37698812 |
gcactaaagttggaatcttattgcaagttgtgataagataacaaattcattta |
37698864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 128 - 261
Target Start/End: Complemental strand, 16841109 - 16840970
Alignment:
| Q |
128 |
catagaaaagtttggtgttcattaaactaaataatatcttcgaagacc-agactttttgaacgtaattagcacgaaagttggaatcttatttcaagttgt |
226 |
Q |
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|||| |||||||||||||| | |||||||||||| ||||| ||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||| |
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| T |
16841109 |
catacaaaagtttggtgtttaataaactaaataaaatcttggaagaccaagactttttgaacgtaattagcac-taagttggaatcttattgcaagttgt |
16841011 |
T |
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| Q |
227 |
g------ataagataacaaattcatttaagtagcaatcaca |
261 |
Q |
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| T |
16841010 |
gatattaataagataacaaattcatttaagtaccaatcaca |
16840970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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