View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10669_2 (Length: 376)
Name: NF10669_2
Description: NF10669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10669_2 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 70 - 376
Target Start/End: Complemental strand, 33618746 - 33618440
Alignment:
| Q |
70 |
catataaccacgtgttaaaaaagctcaatgtagctttgccaaaagnnnnnnntgtctctgatgcatgatgggtgcactgccactccactcgaccatggaa |
169 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33618746 |
catatagccacgtgttaaaaaagctcaatgtagctttaccaaaagaaaaaaatgtctctgatgcatgatgggtgcactgccactccactcgaccatggaa |
33618647 |
T |
|
| Q |
170 |
ctagggaagcaatgaaatggtcaaagctcagaaaacatgtggaaatagaagaccaaaggatctcaaacttcgcattgtattattctcttaccattggttg |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33618646 |
ctagggaagcaatgaaatggtcaaagctcagaaaacatgtggaaatagaagaccaaacgatctcaaacttcgcattgtattattctcttaccattggttg |
33618547 |
T |
|
| Q |
270 |
atgcaacattgaattaggacctctcacataaatttctaaatcactagctttaaaactcccacaattcatcaacctcaacactactacattctcgttcttg |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33618546 |
atgcaacattgaattaggacctctcacataaatttctaaatcactagctttaaaactcccacaattcatcaacctcaacactactacattctcgttcttg |
33618447 |
T |
|
| Q |
370 |
tctcaaa |
376 |
Q |
| |
|
||||||| |
|
|
| T |
33618446 |
tctcaaa |
33618440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University