View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10669_5 (Length: 319)

Name: NF10669_5
Description: NF10669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10669_5
NF10669_5
[»] chr3 (5 HSPs)
chr3 (1-309)||(46995167-46995475)
chr3 (1-215)||(46980447-46980661)
chr3 (1-203)||(46974470-46974672)
chr3 (47-222)||(46997514-46997689)
chr3 (1-212)||(47001187-47001398)


Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 46995475 - 46995167
Alignment:
Q  1 gtttggagatctataactcgtgtgcgtcgactacaccatgatcagagaacgacttgcaaattggctataaacaaccgaacgagaatggaaccgtctcttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46995475 gtttggagatctataactcgtgtgcgtcgactacaccatgatcagagaacgacttgcaaattggctataaacaaccgaacgagaatggaaccgtctcttc 46995376  T
Q  101 ctaaggaatattttgggaattcagtttatgcagtgagcactgagacaacaaaaggtgagttgctggagaatggactaggattggcagcatggaagattca 200  Q
    |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  46995375 ctaaggaatattttgggaattcagtttacgcagtgagcactgaaacaacaaaaggtgagttgctggagaatggactaggattggcatcatggaagattca 46995276  T
Q  201 tctggctattgcaaaatatgatcacagagttgtgcgacaattagtggaagagtggttgcggtctcctatagtggttcgaatggacatgttggttgatcct 300  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46995275 tctagctattgcaaaatatgatcacagagttgtgcgacaattagtggaagagtggttgcggtctcctatagtggttcgaatggacatgttggttgatcct 46995176  T
Q  301 tactctgtg 309  Q
    |||||||||    
T  46995175 tactctgtg 46995167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 46980661 - 46980447
Alignment:
Q  1 gtttggagatctataactcgtgtgcgtcgactacaccatgatcagagaacgacttgcaaattggctataaacaaccgaacgagaatggaaccgtctcttc 100  Q
    ||||||||||||||||||| ||  |||| |||||| || | ||||||||| ||||||||| |||||| |||||||||||| |||||||||||  ||||||    
T  46980661 gtttggagatctataactcatgcacgtcaactacaacacggtcagagaacaacttgcaaaatggctacaaacaaccgaacaagaatggaaccacctcttc 46980562  T
Q  101 ctaaggaatattttgggaattcagtttatgcagtgagcactgagacaacaaaaggtgagttgctggagaatggactaggattggcagcatggaagattca 200  Q
    ||||||||||||||||||||||| |||||| ||||||  |||| || ||   ||| ||||||||||||||||  ||||||| |||||||||||| |||||    
T  46980561 ctaaggaatattttgggaattcactttatgtagtgagtgctgaaacgacggtaggagagttgctggagaatgatctaggatgggcagcatggaaaattca 46980462  T
Q  201 tctggctattgcaaa 215  Q
    | |||||||||||||    
T  46980461 tgtggctattgcaaa 46980447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 46974672 - 46974470
Alignment:
Q  1 gtttggagatctataactcgtgtgcgtcgactacaccatgatcagagaacgacttgcaaattggctataaacaaccgaacgagaatggaaccgtctcttc 100  Q
    ||||||||||||||||||||||  |||| |||||| || | ||||||||| ||||||||| |||||| ||||||||||||||||||||||||  ||||||    
T  46974672 gtttggagatctataactcgtgcacgtcaactacaacacggtcagagaacaacttgcaaactggctacaaacaaccgaacgagaatggaaccacctcttc 46974573  T
Q  101 ctaaggaatattttgggaattcagtttatgcagtgagcactgagacaacaaaaggtgagttgctggagaatggactaggattggcagcatggaagattca 200  Q
    | ||||||||||||||||||||| || |||| |||||  |||| || ||   ||| || |||||||||||||  ||||||| |||||||||||| |||||    
T  46974572 cgaaggaatattttgggaattcacttcatgcggtgagtgctgaaacgacggtaggggaattgctggagaatgatctaggatgggcagcatggaaaattca 46974473  T
Q  201 tct 203  Q
    |||    
T  46974472 tct 46974470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 47 - 222
Target Start/End: Complemental strand, 46997689 - 46997514
Alignment:
Q  47 gaacgacttgcaaattggctataaacaaccgaacgagaatggaaccgtctcttcctaaggaatattttgggaattcagtttatgcagtgagcactgagac 146  Q
    |||| ||||||||||||||  |||||||||||||||||||||||||  ||||||||||||||||||||||||||||  | || ||||||||  |||| ||    
T  46997689 gaacaacttgcaaattggccgtaaacaaccgaacgagaatggaaccacctcttcctaaggaatattttgggaattccatctacgcagtgagggctgaaac 46997590  T
Q  147 aacaaaaggtgagttgctggagaatggactaggattggcagcatggaagattcatctggctattgcaaaatatgat 222  Q
    |||   ||| || |||||||| ||||  ||||||| |||||||||||||||||| |||||||||||||| ||||||    
T  46997589 aacggtaggggaattgctggaaaatgatctaggatgggcagcatggaagattcacctggctattgcaaattatgat 46997514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 47001398 - 47001187
Alignment:
Q  1 gtttggagatctataactcgtgtgcgtcgactacaccatgatcagagaacgacttgcaaattggctataaacaaccgaacgagaatggaaccgtctcttc 100  Q
    ||||||||||||||||||||||   ||| || |||    | ||| ||||| ||||| || ||| || ||||||||||||| ||||| |||||| ||||||    
T  47001398 gtttggagatctataactcgtgcatgtcaacaacaatgcggtcaaagaacaacttgtaagttgtctttaaacaaccgaactagaatagaaccgcctcttc 47001299  T
Q  101 ctaaggaatattttgggaattcagtttatgcagtgagcactgagacaacaaaaggtgagttgctggagaatggactaggattggcagcatggaagattca 200  Q
    | || |||||||||||||||||  || | |||||  |  |||| ||||||  ||| |||||| |   |||||   |||||| ||||||||||||||||||    
T  47001298 caaatgaatattttgggaattcgattcacgcagttggtgctgaaacaacagtaggggagttgttcaggaatgatttaggatgggcagcatggaagattca 47001199  T
Q  201 tctggctattgc 212  Q
    ||||||||||||    
T  47001198 tctggctattgc 47001187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University