View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10669_low_1 (Length: 439)
Name: NF10669_low_1
Description: NF10669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10669_low_1 |
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| [»] scaffold0005 (1 HSPs) |
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| [»] scaffold0003 (2 HSPs) |
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Alignment Details
Target: scaffold0005 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 6 - 422
Target Start/End: Complemental strand, 285925 - 285503
Alignment:
| Q |
6 |
tgagatgaatgcgagagggaatgatttaaatcagaaccgatcaatgttgcaacactttgactacgcgttgtgacaatgattctactaccatagtttcctg |
105 |
Q |
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|||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
285925 |
tgagataaatgcgagagggaatgatttaaatcagcaccgatcaatgttgcaaaactttgactacgcgttgtgacaatgattctgctaccatagtttcctg |
285826 |
T |
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| Q |
106 |
atagaaagagtctttgaaagatatcccagtcaagaaagttctcattccaaaacccatcaagaacaagtagaaacctttgtccggccagcctatccttaag |
205 |
Q |
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| T |
285825 |
atagaaagggtctttggaagatatcccagtcaagaaagttctcattccaaaacccatccagaacaagtagaaacctttgtccgtccagtctatccttaag |
285726 |
T |
|
| Q |
206 |
tttgatttagagtatattcaagtctgagatattagaatacgtcaaagtgaaagactcaaaagcttttctggttatttcattcacatttgaagtctctgac |
305 |
Q |
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| T |
285725 |
tttgatttggagtatattcaagtctgagatattagaatacatcaaagtgaaatactcaaaagcttttctggttatttcattcacatttgaagtctctgac |
285626 |
T |
|
| Q |
306 |
accgaggcccat------gattgaaaatggttcctcacccgttcatcattgaacaaaatttgagcaagagtagtctttcctacccctcccattccaacaa |
399 |
Q |
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|||||||||||| |||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
285625 |
accgaggcccatgatctagattgaaaatggttcctcacacgttcatcattgtacaaaacttgagcaagagtagtctttcctacccctcccgttccaacaa |
285526 |
T |
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| Q |
400 |
tcgcaactaccggcacccactct |
422 |
Q |
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| T |
285525 |
tcgcaactaccggcacccactct |
285503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 118; Significance: 5e-60; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 276 - 422
Target Start/End: Original strand, 101050 - 101202
Alignment:
| Q |
276 |
gttatttcattcacatttgaagtctctgacaccgaggcccatgat------tgaaaatggttcctcacccgttcatcattgaacaaaatttgagcaagag |
369 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||| ||||||||||| |
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| T |
101050 |
gttatttcattcacatttgaagtctctgacaccgaggcccatgatctagattgaaaatggttcctcactcgttcatcattgtacaaaacttgagcaagag |
101149 |
T |
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| Q |
370 |
tagtctttcctacccctcccattccaacaatcgcaactaccggcacccactct |
422 |
Q |
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| T |
101150 |
tagtctttcctacccctcccattccaacaatcgcaactaccggcacccactct |
101202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 96833 - 96881
Alignment:
| Q |
6 |
tgagatgaatgcgagagggaatgatttaaatcagaaccgatcaatgttg |
54 |
Q |
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| T |
96833 |
tgagataaatgcgagagggaatgaattaaatcagctccgatcaatgttg |
96881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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