View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1066_high_2 (Length: 362)

Name: NF1066_high_2
Description: NF1066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1066_high_2
NF1066_high_2
[»] chr3 (1 HSPs)
chr3 (4-362)||(45635027-45635391)


Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 4 - 362
Target Start/End: Complemental strand, 45635391 - 45635027
Alignment:
Q  4 aacaatatatatttaatttctttacgcattctcagttgacattacannnnnnnatagttcctattaaagtatgtccaacgtgatatttaaagaatagatg 103  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||    
T  45635391 aacaagatatatttaatttctttacgcattctcagttgacattacatttttttatagttcctattaaagtatgtccaacgtgatatttaaagaatagatg 45635292  T
Q  104 gaaaaatgg---------ttgcttgcaataatataaaa-gcaaactcgtattacaatctcatggtttccttagtagtctgttttgtttcccttcattgat 193  Q
    |||||||||         |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45635291 gaaaaatgggggttaaccttgcttgcaataatataaaaagcaaactcgtattacaatctcatggtttccttagtagtctgttttgtttcccttcattgat 45635192  T
Q  194 cccctcgctatctcatcgatcaaatggcattctctaatattgctatggttttgtgcttctttttagcaatcataatggcactgccaacccttgcaacctt 293  Q
    |||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  45635191 cccctcgctatctcatc----aaatggcattctctaatattgctatggttttgtgcttctttttagcaatcaacatggcactgccaacccttgcaacctt 45635096  T
Q  294 ctacactgtgggcgattctttgggctggcaaatcggtgttgaatatagcacatggacgattgacaaaac 362  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||    
T  45635095 ctacactgtgggagattctttgggctggcaaatcggtgttgaatatagcaaatggacgagtgaaaaaac 45635027  T

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