View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1066_high_3 (Length: 359)
Name: NF1066_high_3
Description: NF1066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1066_high_3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 30 - 359
Target Start/End: Original strand, 45634686 - 45635020
Alignment:
| Q |
30 |
caagacgcatgccacttgaacaatctccaaaagtagcagatatgaaataatgagttcctgcagtcttaagagctatggttgtctcaccactattgtctga |
129 |
Q |
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| T |
45634686 |
caagacgcatgccacttgaacaatctccaaaagtagcagatatgaaataatgagttcctgcagtcttaagagctatggttgtctcaccactattgtctga |
45634785 |
T |
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| Q |
130 |
actaattggatttccagtggtgcaggagatgtaatcacttgctgcaacttcatccacagtgtgtatagccccatagagaaacactgtcatattaataata |
229 |
Q |
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| T |
45634786 |
actaattggatttccagtggtgcaggagatgtagtcacttgctgcaacttcatccacagtgtgtatagccccatagagaaacactgtcatattaataata |
45634885 |
T |
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| Q |
230 |
ttaatgtaagaaatt-atgaaattttatatctttgttctcatctcattatg--gagaaaaagcaagcattgagttgtgtttgaaatgaa----atagaaa |
322 |
Q |
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| T |
45634886 |
ttaatgtaagaaattgat--aattttatatctttgttctcatctcattatggagagaaaaagcaagcattgagttgtgtttgaaatgaaatatatagaaa |
45634983 |
T |
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| Q |
323 |
ggattctagttcccacttaccaaggctatcaccgact |
359 |
Q |
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| T |
45634984 |
ggattctagttcccacttaccaaggctatcaccgact |
45635020 |
T |
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