View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1066_low_1 (Length: 563)
Name: NF1066_low_1
Description: NF1066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1066_low_1 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 487; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 29 - 563
Target Start/End: Complemental strand, 52070787 - 52070253
Alignment:
| Q |
29 |
atattctgcggtttaatattgctaccaccaatggttagtggttaccaaaaataataaaatagctaagatagtatgaagtctttcatttcatgtttgtgga |
128 |
Q |
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| T |
52070787 |
atattttgcggtttaatattgctaccaccaatggttagtggttaccaaaaataataaaatagctaagatagtatgaagtctttcatttcatgtttgtgga |
52070688 |
T |
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| Q |
129 |
cttggaaatctcatggaacgatgtttaacgtattatatattttattggcattgatttttgggatcttctacattgtcaaactaaagggttttggttgttt |
228 |
Q |
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| T |
52070687 |
cttggaaatctcatggaacgatgtttaacgtattatatattttattggcattgatttttgggatcttctacattgtcaaactaaagggttttggttgttt |
52070588 |
T |
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| Q |
229 |
tctaaactaaaaataaattaatgacaatttttgttattcatcgaactatttgtaaactcttttatttcacacaa-aaaagaaaattattgtctataagca |
327 |
Q |
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| T |
52070587 |
tctaaactaaaaataaattaatgacaatttttgttattcatcgaactatttgtaaactcttttatttcacacaaaaaaataaaattattgtctataagca |
52070488 |
T |
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| Q |
328 |
ttaggctacttttctatatcttttattnnnnnnntattctaacattcattattttttgagacaaataaattcataacattttattaatcaaaatatgttc |
427 |
Q |
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| T |
52070487 |
ttaggctacttttctatatcttttattaaaaaaatattc-aacattcattattttttgagacaaataaattcataacattttattaatcaaaatatgttc |
52070389 |
T |
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| Q |
428 |
aattaatagtgggagaaaatagatttatagtgtacaatattagaaccaaactcagttgcattgtgtcttgacgatagaaaattatccatcgctttaattg |
527 |
Q |
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| T |
52070388 |
aattaatagtgggagaaaatagatttatagtgtacaatattagaaccaaactcagttgcatcgtgtcttgacgatagaaaattatccatcgctttaattg |
52070289 |
T |
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| Q |
528 |
aatcgagctcggaatcaaccggaaccaagtttagtt |
563 |
Q |
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| T |
52070288 |
aatcgagctcggaatcaaccggaaccaagtttagtt |
52070253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 433 - 563
Target Start/End: Complemental strand, 52085230 - 52085098
Alignment:
| Q |
433 |
atagtgggagaaaatagatttata--gtgtacaatattagaaccaaactcagttgcattgtgtcttgacgatagaaaattatccatcgctttaattgaat |
530 |
Q |
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| T |
52085230 |
atagtgggagaaaatagatatatatagtgtacaatattagaatcaaactcagttgcatcgtgtcttgacgatagaaaattatccatcgcttttattgaat |
52085131 |
T |
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| Q |
531 |
cgagctcggaatcaaccggaaccaagtttagtt |
563 |
Q |
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| T |
52085130 |
cgagctcggaatcaaccggaacaaagtttagtt |
52085098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 334 - 406
Target Start/End: Complemental strand, 52085308 - 52085237
Alignment:
| Q |
334 |
tacttttctatatcttttattnnnnnnntattctaacattcattattttttgagacaaataaattcataacat |
406 |
Q |
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| T |
52085308 |
tacttttctatatcttttattaaaaaaatattc-aacattcattattttttgagacaactaaattcataacat |
52085237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 429
Target Start/End: Complemental strand, 27129277 - 27129227
Alignment:
| Q |
379 |
ttttttgagacaaataaattcataacattttattaatcaaaatatgttcaa |
429 |
Q |
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|||||| |||| |||||||| ||||||||||||| |||||||| ||||||| |
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| T |
27129277 |
tttttttagactaataaatttataacattttattgatcaaaatttgttcaa |
27129227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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