View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1066_low_2 (Length: 473)
Name: NF1066_low_2
Description: NF1066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1066_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 191 - 467
Target Start/End: Complemental strand, 4661869 - 4661593
Alignment:
| Q |
191 |
aagtggtcataatattgaagataagtccgaccaccacgccgacattggtgtcgatgtgtcagtgtcaacgcttcatatatcataatcatggccctaaacg |
290 |
Q |
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| T |
4661869 |
aagtggtcataatattgaagataagtccgaccaccacgccgacattggtgtcgatgtgccagtgtcaacgcttcatatatcataatcatggccctaaacg |
4661770 |
T |
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| Q |
291 |
gtagggaccatcagccatgtaatgaccatccatataaagagctgcactctgtggatgcagtccatccatcaccataaactgcatgtcttctgatggtttc |
390 |
Q |
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| T |
4661769 |
gtagggaccatcagccatgtaatgaccatccatataaagagctgcactctgtggatgcagtccatccatcaccataaactgcatgtcttctgatggtttc |
4661670 |
T |
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| Q |
391 |
cagtgcctcttcctttgatttatgaaccagttatttatttgcttctggtccaaacctgttgactcagcctatgctac |
467 |
Q |
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| T |
4661669 |
cagtgcctcttcctttgatttatgaaccagttatttatttgcttctggtccaaacctgttgactcagccaatgctac |
4661593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 29 - 170
Target Start/End: Complemental strand, 4662046 - 4661905
Alignment:
| Q |
29 |
aactgaaacattcacactgcacaagcataaccaagtttcatactatgcttgtcataatactttgaaactagaactatatgtaaatataatgctgactgat |
128 |
Q |
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| T |
4662046 |
aactgaaacattcacactgcacaagcataaccaagtttcatgttatgcttgtcataatactttgaaactagaactatatataaatataatgctgactgat |
4661947 |
T |
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| Q |
129 |
acagtttaaacagtctttgattgtttcaccttccacttaaac |
170 |
Q |
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| T |
4661946 |
acagtttaaacagtctttgattgtttcaccttccacttaaac |
4661905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 434
Target Start/End: Original strand, 37489242 - 37489300
Alignment:
| Q |
376 |
tcttctgatggtttccagtgcctcttcctttgatttatgaaccagttatttatttgctt |
434 |
Q |
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| T |
37489242 |
tcttcagatggtttccagtgtcttttcctctgattgatgaaccaattatttatctgctt |
37489300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 354 - 452
Target Start/End: Original strand, 8791891 - 8791989
Alignment:
| Q |
354 |
atccatcaccataaactgcatgtcttctgatggtttccagtgcctcttcctttgatttatgaaccagttatttatttgcttctggtccaaacctgttga |
452 |
Q |
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| T |
8791891 |
atccatcaccacaaactgcatgtcctctgaaggcttccagtgccgtttcctttgattaataaaccagttgtttatttgcttctgatcaagacctgttga |
8791989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 354 - 437
Target Start/End: Original strand, 8780396 - 8780481
Alignment:
| Q |
354 |
atccatcaccataaactgcatgtcttctgatggtttccagtgcctcttcctttgattt--atgaaccagttatttatttgcttctg |
437 |
Q |
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| T |
8780396 |
atccatcaccacaaactgcatgtcctctgaaggcttccagtgccgttttctttgattttaataaaccagttgtttatttgcttctg |
8780481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 390 - 434
Target Start/End: Original strand, 48282094 - 48282138
Alignment:
| Q |
390 |
ccagtgcctcttcctttgatttatgaaccagttatttatttgctt |
434 |
Q |
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| T |
48282094 |
ccagttccttttcctttgattaataaaccagttatttatttgctt |
48282138 |
T |
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