View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1066_low_3 (Length: 439)
Name: NF1066_low_3
Description: NF1066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1066_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 36523771 - 36523380
Alignment:
| Q |
1 |
accatcagggaaggtgctatcataaacgtataatggagaagttccaatgtccccataaatgatccccaaactttgaaatgctaaactcaatgtccccaac |
100 |
Q |
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| T |
36523771 |
accatcagggaaggtgctatcataaacgtataatggagaagttccaatgtccccataaatgatccccaaactttgaaatgctagactcaatgtccccaac |
36523672 |
T |
|
| Q |
101 |
cagcttgtctgctacaacagatatatcacagttattcaatgaatctgnnnnnnnnnnnnttatctcttataataaagaacggatatttataataatagtg |
200 |
Q |
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| T |
36523671 |
cagcttgtctgctacaacagatatatcacagttattcaatgaatctgaaaaaataaaaatgatctcttataataaagaacggatatttatgataatagtg |
36523572 |
T |
|
| Q |
201 |
aatacatggatgctttaatagtaatagttcgataaaatatcacttagaaatgcaaatcgacattcattgtatcaataaaac-aagagtaatatacaaacc |
299 |
Q |
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||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
36523571 |
aatacatggatgctttaatagtaatagtttgataaaatgccacttagaaatgcaaatcgacattcattgtatcaataaaacaaagagtaacatacaaacc |
36523472 |
T |
|
| Q |
300 |
ttggatgcatggatgttattagctgaggaaacccttccagcctctaaacggagggaatcgacgtgaagatcatttggccatgaattcatgat |
391 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36523471 |
ttggatgcatggatgttattagctgagggaacccttccagcctctaaacggagggaatcgacgtgaagatcatttggccatgaattcatgat |
36523380 |
T |
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