View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1066_low_4 (Length: 433)
Name: NF1066_low_4
Description: NF1066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1066_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 29 - 428
Target Start/End: Complemental strand, 953377 - 952977
Alignment:
| Q |
29 |
agaggaaacaatgggaaaagatgcattggtatcgagatggagatttgaatacaaaatgctttctcgcttcggcactgctaagagaaaagttaatattatc |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
953377 |
agaggaaacaatgggaaaagatgcattggtatcgagatggagatttgaatacaaaatgctttcacgcttcggcactgctaagagaaaagttaatattatc |
953278 |
T |
|
| Q |
129 |
ctattttgaagatgcaaatgaagtgcgggcacaaatgaagtacatatcgccaatgtggccaaagattcattttcctggtttgtttcaggttactgacagt |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
953277 |
ctattttgaagatgcaaatgaagtgcgggcacaaatgaagtacatatcgtcaatgtggccaaagattcatttttctggtttgtttcaggttactgacagt |
953178 |
T |
|
| Q |
229 |
gtgcgtgcatcagtgattaacgccacaaatcaggtgatctcagaagatgaaaatacc-atctcgttgtgcctttttgcgttgtggaatttaaagaggaaa |
327 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
953177 |
gtgcgtgcatcagtgattaacgccacaaatcaggtgatctcagaagatgaaaatacctatctcgttgtgcctttttgcgttgaggaatttaaagaggaaa |
953078 |
T |
|
| Q |
328 |
tgttctctttgctagcagataagtgtccaggttctaaaggtttcaacttgggattttaccaacatttttggcagatatgcagttttgatatattcttgga |
427 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
953077 |
tgttctctttgctagcagataagtgtccaggttctaaaggtttcaacttgggattttaccaacatttttggcagatatgcagttttgatatattctggga |
952978 |
T |
|
| Q |
428 |
g |
428 |
Q |
| |
|
| |
|
|
| T |
952977 |
g |
952977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University