View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1066_low_7 (Length: 293)
Name: NF1066_low_7
Description: NF1066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1066_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 47 - 245
Target Start/End: Original strand, 27359000 - 27359198
Alignment:
| Q |
47 |
cagcaccttgcttagagcttccttcataatcttagcatcgaagaaattggacgtgccgtttggcctgtaaaagtacacgcttggtgtgtgaaaatttgga |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27359000 |
cagcaccttgcttagagcttccttcataatcttagcatcgaagaaattggacgtgccgtttggcctgtaaaagtacacgcttggtgtgtgaaaatttgga |
27359099 |
T |
|
| Q |
147 |
accaccaagtcgacgttggagttccataacgcctttcgtggtgtctcctccgccggacgcaccaccgtcgactctttcacgttgatcaacatctgtggt |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
27359100 |
accaccaagtcgacgttggagttccataacgcctttcgtggtgtctcctccgccggacgcaccaccgtcgactctttcacgttgatcaacatctctggt |
27359198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 47 - 240
Target Start/End: Complemental strand, 45408106 - 45407913
Alignment:
| Q |
47 |
cagcaccttgcttagagcttccttcataatcttagcatcgaagaaattggacgtgccgtttggcctgtaaaagtacacgcttggtgtgtgaaaatttgga |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45408106 |
cagcaccttgcttagagcttccttcataatcttagcatcgaagaaattggacgtgccgtttggcctgtaaaagtacacgcttggtgtgtgaaaatttgga |
45408007 |
T |
|
| Q |
147 |
accaccaagtcgacgttggagttccataacgcctttcgtggtgtctcctccgccggacgcaccaccgtcgactctttcacgttgatcaacatct |
240 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
45408006 |
accaccaagtcgacgttggaattccataacgcctttcgtggtgtctcctccgccggacgcaccaccatcgactctttcacgttgatcaacatct |
45407913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 48 - 97
Target Start/End: Complemental strand, 1108146 - 1108097
Alignment:
| Q |
48 |
agcaccttgcttagagcttccttcataatcttagcatcgaagaaattgga |
97 |
Q |
| |
|
||||||| ||| |||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
1108146 |
agcacctagctgagagcttccttcataatcttggcattgaagaaattgga |
1108097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 172
Target Start/End: Complemental strand, 1127688 - 1127564
Alignment:
| Q |
48 |
agcaccttgcttagagcttccttcataatcttagcatcgaagaaattggacgtgccgtttggcctgtaaaagtacacgcttggtgtgtgaaaatttggaa |
147 |
Q |
| |
|
||||||||||| |||||||| || | || ||| ||||| ||||||||||| | || || || || |||||||| || |||||||| || ||||| || | |
|
|
| T |
1127688 |
agcaccttgctaagagcttctttaagaaccttggcatcaaagaaattggaagcaccattaggtctataaaagtaaacacttggtgtatggaaattcggta |
1127589 |
T |
|
| Q |
148 |
ccaccaagtcgacgttggagttcca |
172 |
Q |
| |
|
||||||| || |||||||| ||||| |
|
|
| T |
1127588 |
ccaccaaatcaacgttggaattcca |
1127564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University