View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1066_low_8 (Length: 278)
Name: NF1066_low_8
Description: NF1066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1066_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 122 - 265
Target Start/End: Complemental strand, 18978388 - 18978245
Alignment:
| Q |
122 |
actttcgcttatcggaaggttgcctatgattttgattaagtaatataaaactagattaggcaaatgcatttcttaagcaaaagaaaagaaataaagatta |
221 |
Q |
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| T |
18978388 |
actttcacttatcggaaggttgcctatgattttgattaagtactataaaactagattaggcaaatgcatttcttaagcaaaagaaaagaaataaagatta |
18978289 |
T |
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| Q |
222 |
tagaaattttttcataagaatacttt-catgacctcaagaataat |
265 |
Q |
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| T |
18978288 |
tagaaat-ttttcataagaatactttccatgacctcaagactaat |
18978245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 18978470 - 18978384
Alignment:
| Q |
1 |
ggtttacttgttaatgagacccattaaacccgaatatccatttttacattccaaaaaattgtaggatattctcacgcttcaaacttt |
87 |
Q |
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| T |
18978470 |
ggtttacttgttagtgagacccattaaatccgaaaatccatttttacattccaaaaaattgtaggatattctcacgcttcaaacttt |
18978384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 78 - 207
Target Start/End: Original strand, 34704626 - 34704753
Alignment:
| Q |
78 |
ttcaaactttttgtctagctttatttttccatcaacttttgttcactttcgcttatcggaaggttgcctatgattttgattaagtaatataaaactagat |
177 |
Q |
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| T |
34704626 |
ttcaaactttttttctagctttatctttccagcaaccttcctt-attttcacttattggaatgttgcctaagattttg-ttaagcactataaaactagat |
34704723 |
T |
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| Q |
178 |
taggcaaatgcatttcttaagcaaaagaaa |
207 |
Q |
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| T |
34704724 |
taggtgaatgcttttcctaaacaaaagaaa |
34704753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 19028218 - 19028299
Alignment:
| Q |
19 |
acccattaaacccgaatatccatttttacattccaaaaaattgtaggatattctcacgcttcaaactttttgtctagcttta |
100 |
Q |
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| T |
19028218 |
acccattaagcccgaatacccatttttacattccgaaaattcttagggtattctcatgctttaaactttgtgtctaacttta |
19028299 |
T |
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