View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1066_low_9 (Length: 254)
Name: NF1066_low_9
Description: NF1066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1066_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 19149013 - 19148771
Alignment:
| Q |
1 |
aacatgtctacacataaccatggatgactatacacctcaaattatcatgtaaaaatcaaaagtacacaggatagttacattccaaaacatttgcaataac |
100 |
Q |
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| T |
19149013 |
aacatgtctacacataaccatggatgactatacacctcaaattatcacataaaaatcaaaagtacagaggatagtaacattccaaaacatttgcaataac |
19148914 |
T |
|
| Q |
101 |
agaaacaacgtgaatgaacgaggaatcacggtccaaacccacacaaatgaataataaataagcatagcaaacaacaggattcaacaactatatagttctt |
200 |
Q |
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|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
19148913 |
agaaacaatgtgaatgaacgaggaatcacagtccaaacccacacaaatgaataataaataagcatagcaaacaacaggattcaacaaatatatagttctt |
19148814 |
T |
|
| Q |
201 |
ttatcataactctactttaactttgtgatgatgtccatctcat |
243 |
Q |
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| T |
19148813 |
ttatcataactctactttaactttgtaatgttgtttatctcat |
19148771 |
T |
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