View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10670_high_2 (Length: 388)
Name: NF10670_high_2
Description: NF10670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10670_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 20 - 378
Target Start/End: Original strand, 9795777 - 9796127
Alignment:
| Q |
20 |
atgcatgggttagagtctagtttgctcaaaaagtcaaaaaatcttaacttaattaggcaaaatgaattgatagatagatatagatagttagttaggaatt |
119 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9795777 |
atgcacgggttagagtctagtttgctcaaaaagtcaaaaaatcttaacttaattaggcaaaatgaattgatagatagatatagatagttagttaggaatt |
9795876 |
T |
|
| Q |
120 |
aattaattgcctaattacttcagttcaagaaattcttcaatcacacnnnnnnnnnnnnntggtaccctgcttgaaaagaataaaattcccactataaaag |
219 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| | || |||||| ||||||||| || |||||||||||| |||||||||||||| |
|
|
| T |
9795877 |
aattaattgcctaattacttcaattcaagaaa---tccattcacac---aaaaaaaaaatggtaccctactcaaaaagaataaaaatcccactataaaag |
9795970 |
T |
|
| Q |
220 |
aaagtcattttgcctataaatattgcaccttacctcatcagattcactcatcaaccacaagcaattcattattgg-atnnnnnnnntcagcattatttgc |
318 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||| | |||||||||||||| |
|
|
| T |
9795971 |
aaagtcattttgcctataaatagtgcaccttacctcgtcagattcactcatcaaccacaagcaattcattgttggaaaaaaaaaaatcagcattatttgc |
9796070 |
T |
|
| Q |
319 |
aaaatgggttcaaagggtgttgttgggtccattttcattctcttccttaatctccctttg |
378 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
9796071 |
aaaatgggttcaaaggg---tgttgggtccattttcattatcttccttaatctccttttg |
9796127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 40 - 141
Target Start/End: Original strand, 9755430 - 9755527
Alignment:
| Q |
40 |
tttgctcaaaaagtcaaaaaatcttaacttaattaggcaaaatgaattgatagatagatatagatagttagttaggaattaattaattgcctaattactt |
139 |
Q |
| |
|
||||||||||||||||||| | ||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| || |
|
|
| T |
9755430 |
tttgctcaaaaagtcaaaaccacataatttaattaggcaaaatgaattgata----gatatagatagttagttatgaattaattaattgcctaattagtt |
9755525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 305 - 378
Target Start/End: Original strand, 9802046 - 9802116
Alignment:
| Q |
305 |
tcagcattatttgcaaaatgggttcaaagggtgttgttgggtccattttcattctcttccttaatctccctttg |
378 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
9802046 |
tcagcattatttgcaaaatgggttcaaaggg---tgttgggtccattttcattatcttccttaatctccttttg |
9802116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 372
Target Start/End: Original strand, 9755644 - 9755704
Alignment:
| Q |
309 |
cattatttgcaaaatgggttcaaagggtgttgttgggtccattttcattctcttccttaatctc |
372 |
Q |
| |
|
|||||||| ||||||||||| ||||||||| | | ||||||||||||||||||||| ||||| |
|
|
| T |
9755644 |
cattatttacaaaatgggtttaaagggtgtag---gatccattttcattctcttccttcatctc |
9755704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 285
Target Start/End: Original strand, 9781105 - 9781157
Alignment:
| Q |
232 |
cctataaatattgcaccttacctcatcagattcactcatcaaccacaagcaatt |
285 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||||||||||| ||||| |
|
|
| T |
9781105 |
cctataaatattgcaccttacctc-tattattcactcatcaaccacaaacaatt |
9781157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 339 - 372
Target Start/End: Original strand, 9781210 - 9781243
Alignment:
| Q |
339 |
tgttgggtccattttcattctcttccttaatctc |
372 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |
|
|
| T |
9781210 |
tgttggatccattttcattctcttccttaatctc |
9781243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 92
Target Start/End: Original strand, 9780493 - 9780541
Alignment:
| Q |
44 |
ctcaaaaagtcaaaaaatcttaacttaattaggcaaaatgaattgatag |
92 |
Q |
| |
|
||||||||||||||| || || ||||||||||||||||||||||||| |
|
|
| T |
9780493 |
ctcaaaaagtcaaaacctcagaatttaattaggcaaaatgaattgatag |
9780541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University