View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10670_high_5 (Length: 240)
Name: NF10670_high_5
Description: NF10670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10670_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 32582844 - 32582620
Alignment:
| Q |
1 |
tctcttggtcagcaaggtagggtgaatttgagacgtagtaaaaggctctctatgtctcttaagttgcacgctatggaatcagaaaaaagtcctatggaga |
100 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32582844 |
tctcttggtcagcaaggtagggtgaatctgagacgtagtaaaaggctctctatgtctcttaagttgcacgctatggaatcagaaaaaagtcctatggaga |
32582745 |
T |
|
| Q |
101 |
aaacaactggcaaaccagatatcgtgatcaacaagaaaaaaccaactaccaaagcagctgtgagnnnnnnnnnnnnntcaactgccaatgcagctgtgac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |
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| T |
32582744 |
aaacaactggcaaaccagatatcgtgatcaacaagaaaaaaccaactaccaaagcagctgtgagaaaaaagaaaaaatcaactgccaatgcagctgggac |
32582645 |
T |
|
| Q |
201 |
tgaagagaaaaaatatgacccattt |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
32582644 |
tgaagagaaaaaatatgacccattt |
32582620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 32600628 - 32600465
Alignment:
| Q |
1 |
tctcttggtcagcaaggtagggtgaatttgagacgtagtaaaaggctctctatgtctctt-aagttgcacgctatggaatcagaaaaaagtcctatggag |
99 |
Q |
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||||||||||| ||||||| ||||||||| ||||||||||||||||| |||||||||||| |||||||||| |||| ||||||||||||||||||||||| |
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| T |
32600628 |
tctcttggtcaccaaggtacggtgaattttagacgtagtaaaaggctgtctatgtctctttaagttgcacggtatgaaatcagaaaaaagtcctatggag |
32600529 |
T |
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| Q |
100 |
aaaacaactggcaaaccagatatcgtgatcaacaagaaaaaaccaactaccaaagcagctgtga |
163 |
Q |
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| T |
32600528 |
aaaacaactggcaaaccagatgtcgtgatcaagaagaaaaaatcaactgccaatgcagctgtga |
32600465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 29 - 225
Target Start/End: Complemental strand, 32632056 - 32631860
Alignment:
| Q |
29 |
tgagacgtagtaaaaggctctctatgtctcttaagttgcacgctatggaatcagaaaaaagtcctatggagaaaacaactggcaaaccagatatcgtgat |
128 |
Q |
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||||||||||||||||||| ||| | ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
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| T |
32632056 |
tgagacgtagtaaaaggctgtctgtcgctcttaagttgcatggtatggaatcagaaaaaagtcctatggagaaaacaactggcaaaccagacgtcatgat |
32631957 |
T |
|
| Q |
129 |
caacaagaaaaaaccaactaccaaagcagctgtgagnnnnnnnnnnnnntcaactgccaatgcagctgtgactgaagagaaaaaatatgacccattt |
225 |
Q |
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| T |
32631956 |
caagaagaaaaaatcaacttccaaagcagctgtgacaaaaaagaaaatatcaactgccaaagcagctgtgactgaagagaaaaaatacgacccattt |
32631860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 61 - 225
Target Start/End: Complemental strand, 32657916 - 32657752
Alignment:
| Q |
61 |
aagttgcacgctatggaatcagaaaaaagtcctatggagaaaacaactggcaaaccagatatcgtgatcaacaagaaaaaaccaactaccaaagcagctg |
160 |
Q |
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|||||||||| ||||||||||||||||| ||| ||||||||||||||| ||||||||||| || ||||||| ||||||||| ||||| |||||||||||| |
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| T |
32657916 |
aagttgcacggtatggaatcagaaaaaattccgatggagaaaacaactagcaaaccagatgtcatgatcaagaagaaaaaatcaacttccaaagcagctg |
32657817 |
T |
|
| Q |
161 |
tgagnnnnnnnnnnnnntcaactgccaatgcagctgtgactgaagagaaaaaatatgacccattt |
225 |
Q |
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||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
32657816 |
tgacaaaaaagaaaatatcaactgccaaagcagctgtgactgaagagaaaaaatatgacccattt |
32657752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 32600486 - 32600440
Alignment:
| Q |
178 |
tcaactgccaatgcagctgtgactgaagagaaaaaatatgacccatt |
224 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32600486 |
tcaactgccaatgcagctgtgacggaagagaaaaaatatgacccatt |
32600440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 41147787 - 41147638
Alignment:
| Q |
1 |
tctcttggtcagcaaggtagggtgaatttgagacgtagtaaaaggctctctatgtctcttaagttgcacgct---------atggaatcagaaaaaagtc |
91 |
Q |
| |
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||||||||||| ||||||| ||||||||||||||||||| ||||||| |||| | | |||| ||||| | | ||| |||||||||| ||| |
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| T |
41147787 |
tctcttggtcaccaaggtatggtgaatttgagacgtagtgaaaggcttcctatctgtgttaaattgcatggtccagtcaagatgaaatcagaaaagtgtc |
41147688 |
T |
|
| Q |
92 |
ctatggagaaaacaactggcaaaccagatatcgtgatcaacaagaaaaaa |
141 |
Q |
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|| |||| ||||||||||||||||||||| |||||||||| ||||||||| |
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| T |
41147687 |
ctctggaaaaaacaactggcaaaccagatgtcgtgatcaaaaagaaaaaa |
41147638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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