View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10670_low_1 (Length: 434)
Name: NF10670_low_1
Description: NF10670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10670_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Complemental strand, 6313294 - 6312881
Alignment:
| Q |
1 |
ctgacacaacaaagtcaaggttgtcgatgatatactttggaggaccacccttgagtgaaaagatagtgcctttaccttctttaatgttnnnnnnngaaga |
100 |
Q |
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| T |
6313294 |
ctgacacaacaaagtcaaggttgtcgatgatatactttggaggaccacccttgagtgaaaagatagtgcctttaccttctttaatgttaaaaaaagaaga |
6313195 |
T |
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| Q |
101 |
aagtttgtacaaagagttcacgtggttggagtacaagaaagcaatgtacaattcaaggctggctgataatagacttgggccttttgaaaaatcttatggc |
200 |
Q |
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| T |
6313194 |
aagtttgtacaaagagttcacgtggttggagtacaagaaagcaatgtacaattcaaggctggctgattatagacttgggccttttgaaaaatcttatggc |
6313095 |
T |
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| Q |
201 |
aaatgaagcaaatacctcaaaattaattctgaatgttggcacatgatatttggcctttctttttgggtgtacgcgtttgggattccaatagttgactcta |
300 |
Q |
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| T |
6313094 |
aaatgaagcaaatacctcaaaattaattctgaatgttggcacatgatatttggcctttctttttgggtgtacgcgtttgggattccaatagttgactcta |
6312995 |
T |
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| Q |
301 |
cttttttgacnnnnnnnnnnnntgaaagtgaataggttgtttactttacttctagtatgtttattcatttatctatctatgctatttttcttcttgtttg |
400 |
Q |
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| T |
6312994 |
cttttttgacatatatatatattgaaagtgaataggttgtttactttacttctagtatgtttattcatttatctatctatgctatttttcttcttgtttg |
6312895 |
T |
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| Q |
401 |
attgaaatgtaaca |
414 |
Q |
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| T |
6312894 |
attgaaatgtaaca |
6312881 |
T |
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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 38546460 - 38546538
Alignment:
| Q |
1 |
ctgacacaacaaagtcaaggttgtcgatgatatactttggaggaccacccttgagtgaaaagatagtgcctttaccttc |
79 |
Q |
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||||||||| | |||||||||||| ||||| || |||||||| |||||||||| ||||||| |||| ||||| ||||| |
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| T |
38546460 |
ctgacacaagtatgtcaaggttgtcaatgatttattttggagggccacccttgaatgaaaagttagtacctttgccttc |
38546538 |
T |
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