View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10670_low_10 (Length: 297)

Name: NF10670_low_10
Description: NF10670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10670_low_10
NF10670_low_10
[»] chr5 (4 HSPs)
chr5 (17-281)||(20838898-20839162)
chr5 (17-282)||(20812543-20812808)
chr5 (201-283)||(12598803-12598885)
chr5 (94-150)||(15803260-15803316)
[»] chr8 (11 HSPs)
chr8 (21-282)||(3398190-3398451)
chr8 (17-282)||(31176113-31176378)
chr8 (27-183)||(3324769-3324925)
chr8 (114-283)||(3375712-3375880)
chr8 (77-169)||(3262410-3262502)
chr8 (199-281)||(3407006-3407088)
chr8 (197-283)||(7164327-7164413)
chr8 (77-163)||(3267041-3267127)
chr8 (94-150)||(3391332-3391388)
chr8 (203-282)||(3391203-3391282)
chr8 (198-282)||(3429652-3429740)
[»] chr6 (1 HSPs)
chr6 (86-167)||(31059594-31059675)
[»] chr3 (2 HSPs)
chr3 (202-282)||(6905497-6905577)
chr3 (77-281)||(32410763-32410964)
[»] chr2 (1 HSPs)
chr2 (87-282)||(14766611-14766803)
[»] chr7 (1 HSPs)
chr7 (117-173)||(8371420-8371476)


Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-141; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 17 - 281
Target Start/End: Original strand, 20838898 - 20839162
Alignment:
Q  17 agagagtaataatatggactatcaatcaccgatgcttaccgtcctttcaaagcttcgatgtgtttggtttcaatgccactcagagaatcaacttactcaa 116  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20838898 agagagtaataatatggactatcaatcaccgatggttaccgtcctatcaaagcttcgatgtgtttggtttcaatgccactcagagaatcaacttactcaa 20838997  T
Q  117 gaattaagaagatttattgatgatctatatgatgtgaattttactgagttggaaacaacatcacatggacaccaaatcaaaaatctttccttgaaatcac 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  20838998 gaattaagaagatttattgatgatctatatgatgtgaattttactgagttggaaacaacatcacatggacaccaaatcaaaaatcttttcttgaaatcac 20839097  T
Q  217 ttgtgattggaatgggaagttcccaaatagtcacagatactcttggcaagagcttagcacaggtt 281  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20839098 ttgtgattggaatgggaagttcccaaatagtcacagatactcttggcaagagcttagcacaggtt 20839162  T

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Target: chr5; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 17 - 282
Target Start/End: Original strand, 20812543 - 20812808
Alignment:
Q  17 agagagtaataatatggactatcaatcaccgatgcttaccgtcctttcaaagcttcgatgtgtttggtttcaatgccactcagagaatcaacttactcaa 116  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20812543 agagagtaataatatggaatatcaatcaccgatgcttaccgtcctatcaaagcttcgatgtgtttggtttcaatgccactcagagaatcaacttactcaa 20812642  T
Q  117 gaattaagaagatttattgatgatctatatgatgtgaattttactgagttggaaacaacatcacatggacaccaaatcaaaaatctttccttgaaatcac 216  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||    
T  20812643 gaattaagaagatatattgatgatctatatgatgtgaattttactgagttggaaacaacatcacatgcacaccaaatcgaaaatctttccttgaaattac 20812742  T
Q  217 ttgtgattggaatgggaagttcccaaatagtcacagatactcttggcaagagcttagcacaggttc 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20812743 ttgtgattggaatgggaagttcccaaatagtcacagatactcttggcaagagcttagcacaggttc 20812808  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 283
Target Start/End: Complemental strand, 12598885 - 12598803
Alignment:
Q  201 ctttccttgaaatcacttgtgattggaatgggaagttcccaaatagtcacagatactcttggcaagagcttagcacaggttct 283  Q
    ||||| |||| ||||||| ||||||||||||| |||| |||| | ||||  || ||||||||||||| | || ||||||||||    
T  12598885 ctttctttgagatcacttttgattggaatggggagtttccaacttgtcatcgacactcttggcaagaacatatcacaggttct 12598803  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 150
Target Start/End: Original strand, 15803260 - 15803316
Alignment:
Q  94 actcagagaatcaacttactcaagaattaagaagatttattgatgatctatatgatg 150  Q
    ||||||||| |||||| |  |||||||| ||||||||| ||||| ||||||||||||    
T  15803260 actcagagattcaactgaaacaagaattcagaagatttcttgataatctatatgatg 15803316  T

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Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 21 - 282
Target Start/End: Complemental strand, 3398451 - 3398190
Alignment:
Q  21 agtaataatatggactatcaatcaccgatgcttaccgtcctttcaaagcttcgatgtgtttggtttcaatgccactcagagaatcaacttactcaagaat 120  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  3398451 agtaataatatggactatcaatcaccaatgcttaccgtcctttcaaagcttcgatgtgtttggtttcaatgccagtcagagaatcaacttactcaagaat 3398352  T
Q  121 taagaagatttattgatgatctatatgatgtgaattttactgagttggaaacaacatcacatggacaccaaatcaaaaatctttccttgaaatcacttgt 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  3398351 taagaagatttattgatgatctatatgatgtgaattttactgagttggaaacaacatcacatggacaccaaatcacaaatctttccttgaaatcaattgt 3398252  T
Q  221 gattggaatgggaagttcccaaatagtcacagatactcttggcaagagcttagcacaggttc 282  Q
    |||||||||||||||||||||||||||||  ||||||||||  |||||||||||||||||||    
T  3398251 gattggaatgggaagttcccaaatagtcatggatactcttgataagagcttagcacaggttc 3398190  T

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Target: chr8; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 282
Target Start/End: Original strand, 31176113 - 31176378
Alignment:
Q  17 agagagtaataatatggactatcaatcaccgatgcttaccgtcctttcaaagcttcgatgtgtttggtttcaatgccactcagagaatcaacttactcaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  31176113 agagagtaataatatggactatcaatcaccgatgcttaccgtcctttcaaagcttcgatgtgtttgggttcaatgtcactcagagaatcaacttactcaa 31176212  T
Q  117 gaattaagaagatttattgatgatctatatgatgtgaattttactgagttggaaacaacatcacatggacaccaaatcaaaaatctttccttgaaatcac 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||     
T  31176213 gaattaagaagatttattgatgatctatatgatgtgaattttactgagttggaaacaacatcatatggacaccaaatcacaaatatttccttgaaatcaa 31176312  T
Q  217 ttgtgattggaatgggaagttcccaaatagtcacagatactcttggcaagagcttagcacaggttc 282  Q
    ||| ||||||||||||||||||||||||||||   |||||||||| ||||||||||||||||||||    
T  31176313 ttgggattggaatgggaagttcccaaatagtcttggatactcttgacaagagcttagcacaggttc 31176378  T

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Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 27 - 183
Target Start/End: Complemental strand, 3324925 - 3324769
Alignment:
Q  27 aatatggactatcaatcaccgatgcttaccgtcctttcaaagcttcgatgtgtttggtttcaatgccactcagagaatcaacttactcaagaattaagaa 126  Q
    ||||||| |||||||||||| |||||| ||   |||||||| | | || |||||||| |||||||||  ||||||| |||||| ||||||||||||||||    
T  3324925 aatatgggctatcaatcaccaatgcttcccaatctttcaaaacatagaagtgtttggattcaatgccgatcagagattcaactgactcaagaattaagaa 3324826  T
Q  127 gatttattgatgatctatatgatgtgaattttactgagttggaaacaacatcacatg 183  Q
      ||| ||||||||||||||||||| | ||||||  |||| ||||||| ||||||||    
T  3324825 acttttttgatgatctatatgatgtaagttttaccaagttcgaaacaatatcacatg 3324769  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 114 - 283
Target Start/End: Original strand, 3375712 - 3375880
Alignment:
Q  114 caagaattaagaagatttattgatgatctatatgatgtgaattttactgagttggaaacaacatcacatggacaccaaatcaaaaatctttccttgaaat 213  Q
    ||||||||||||| |||| |||||||||| |||||||| || ||||| |||||| |||||||||| ||| |||  | |||   || |||||| |||| ||    
T  3375712 caagaattaagaaaatttgttgatgatctgtatgatgtaaactttaccgagttgaaaacaacatcgcatagaccacgaatgtcaagtctttctttgagat 3375811  T
Q  214 cacttgtgattggaatgggaagttcccaaatagtcacagatactcttggcaagagcttagcacaggttct 283  Q
    ||||| |||||||||| || |||| |||| | ||||  || ||||||| ||||| | || ||||||||||    
T  3375812 cacttttgattggaatagggagtttccaacttgtca-tgacactcttgtcaagaacatatcacaggttct 3375880  T

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Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 77 - 169
Target Start/End: Complemental strand, 3262502 - 3262410
Alignment:
Q  77 tgtttggtttcaatgccactcagagaatcaacttactcaagaattaagaagatttattgatgatctatatgatgtgaattttactgagttgga 169  Q
    ||||||||| ||||||| |||| ||| |||||| |||| ||||||| ||||| || ||||||||| || |||||| ||||||||||| |||||    
T  3262502 tgtttggttacaatgccgctcaaagattcaactaactcgagaattacgaagaattcttgatgatcaatgtgatgtaaattttactgaattgga 3262410  T

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Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 199 - 281
Target Start/End: Complemental strand, 3407088 - 3407006
Alignment:
Q  199 atctttccttgaaatcacttgtgattggaatgggaagttcccaaatagtcacagatactcttggcaagagcttagcacaggtt 281  Q
    ||||||||||| |||| ||| |||||||||||||||||| ||| | |||||  || |||||||||||||||||| | ||||||    
T  3407088 atctttccttgcaatctcttttgattggaatgggaagttaccacaaagtcaacgagactcttggcaagagcttatcgcaggtt 3407006  T

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Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 283
Target Start/End: Complemental strand, 7164413 - 7164327
Alignment:
Q  197 aaatctttccttgaaatcacttgtgattggaatgggaagttcccaaatagtcacagatactcttggcaagagcttagcacaggttct 283  Q
    |||||||||||||| ||||||| ||||||||||||||||||  || ||| |||  ||||||| |||||||||| || | ||||||||    
T  7164413 aaatctttccttgagatcacttttgattggaatgggaagttgtcacataatcattgatactcgtggcaagagcatatcccaggttct 7164327  T

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Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 163
Target Start/End: Complemental strand, 3267127 - 3267041
Alignment:
Q  77 tgtttggtttcaatgccactcagagaatcaacttactcaagaattaagaagatttattgatgatctatatgatgtgaattttactga 163  Q
    ||||||| | |||||||||||| |||||||||| ||||||||||||| || | || ||||||||| |||| || | |||| ||||||    
T  3267127 tgtttggatacaatgccactcaaagaatcaactaactcaagaattaaaaataatttttgatgatcaatattatattaattgtactga 3267041  T

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Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 150
Target Start/End: Complemental strand, 3391388 - 3391332
Alignment:
Q  94 actcagagaatcaacttactcaagaattaagaagatttattgatgatctatatgatg 150  Q
    ||||||||| |||||| |  |||||||| ||||||||| ||||||||||||||||||    
T  3391388 actcagagattcaactgaaacaagaattcagaagatttcttgatgatctatatgatg 3391332  T

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Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 282
Target Start/End: Complemental strand, 3391282 - 3391203
Alignment:
Q  203 ttccttgaaatcacttgtgattggaatgggaagttcccaaatagtcacagatactcttggcaagagcttagcacaggttc 282  Q
    |||||||| ||| ||| ||||||||||||||| || ||| |||||||   ||| |||||| ||||||||| |||||||||    
T  3391282 ttccttgagatctcttttgattggaatgggaaattgccacatagtcatcaatattcttgggaagagcttatcacaggttc 3391203  T

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Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 198 - 282
Target Start/End: Original strand, 3429652 - 3429740
Alignment:
Q  198 aatctttccttgaaatcacttgtgattggaatgggaagttccc----aaatagtcacagatactcttggcaagagcttagcacaggttc 282  Q
    ||||||| ||||| ||| ||| |||||||||||||||||| ||    | |||||||  ||||||||||||||||| ||| |||||||||    
T  3429652 aatcttttcttgagatctcttatgattggaatgggaagttgccacatatatagtcattgatactcttggcaagagtttatcacaggttc 3429740  T

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Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 86 - 167
Target Start/End: Complemental strand, 31059675 - 31059594
Alignment:
Q  86 tcaatgccactcagagaatcaacttactcaagaattaagaagatttattgatgatctatatgatgtgaattttactgagttg 167  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||| ||||||| ||||||||  |||||||||||||||||    
T  31059675 tcaatgccactcagagattcaactaactcaagaattaagaagatttcttgatgacctatatgaattgaattttactgagttg 31059594  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 202 - 282
Target Start/End: Complemental strand, 6905577 - 6905497
Alignment:
Q  202 tttccttgaaatcacttgtgattggaatgggaagttcccaaatagtcacagatactcttggcaagagcttagcacaggttc 282  Q
    ||||||||||||| ||| |||||  ||||||||||| ||| ||||||   ||||||||||||||||||||| |||||||||    
T  6905577 tttccttgaaatctcttttgattacaatgggaagttgccacatagtcgtcgatactcttggcaagagcttatcacaggttc 6905497  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 77 - 281
Target Start/End: Complemental strand, 32410964 - 32410763
Alignment:
Q  77 tgtttggtttcaatgccactcagagaatcaacttactcaagaattaagaagatttattgatgatctatatgatgtgaattttactgagttggaaacaaca 176  Q
    ||||||| | ||||||| |||| ||| |||||| |||||||||||| ||||| || ||| || || |||||||| ||| |||||  |||||||   |||     
T  32410964 tgtttgggtacaatgccgctcaaagattcaactaactcaagaattacgaagaattcttggtggtcaatatgatgcgaactttaccaagttgga---aacg 32410868  T
Q  177 tcacatggacaccaaatcaaaaatctttccttgaaatcacttgtgattggaatgggaagttcccaaatagtcacagatactcttggcaagagcttagcac 276  Q
    ||||||| |   ||| ||  ||||| ||| ||||  || ||| ||||| |||||||||||| ||| ||||| |  |||||||||||||||||| || |||    
T  32410867 tcacatgcatcacaattctcaaatcattctttgaggtcgcttttgattagaatgggaagttgccacatagttattgatactcttggcaagagcatatcac 32410768  T
Q  277 aggtt 281  Q
    |||||    
T  32410767 aggtt 32410763  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 282
Target Start/End: Complemental strand, 14766803 - 14766611
Alignment:
Q  87 caatgccactcagagaatcaacttactcaagaattaagaagatttattgatgatctatatgatgtgaattttactgagttggaaacaacatcacatggac 186  Q
    |||||||||||  ||| |||||| || |  ||||||| ||||||||||||||||||| ||||||  |||||||||||  ||||   ||||||||||  |     
T  14766803 caatgccactcgaagattcaactaacccgggaattaacaagatttattgatgatctacatgatgcaaattttactgaactgga---aacatcacatacat 14766707  T
Q  187 accaaatcaaaaatctttccttgaaatcacttgtgattggaatgggaagttcccaaatagtcacagatactcttggcaagagcttagcacaggttc 282  Q
      ||||||     |||||| ||||  |||||| |||||||||||||||||| | | | ||| | | ||||||||||||| |||||| |||||||||    
T  14766706 cacaaatctctgttctttcgttgaggtcacttttgattggaatgggaagttacgacacagttataaatactcttggcaaaagcttatcacaggttc 14766611  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 117 - 173
Target Start/End: Complemental strand, 8371476 - 8371420
Alignment:
Q  117 gaattaagaagatttattgatgatctatatgatgtgaattttactgagttggaaaca 173  Q
    ||||||||||||||| ||||||||||||||||||  |||||||||||  ||||||||    
T  8371476 gaattaagaagatttcttgatgatctatatgatgcaaattttactgaactggaaaca 8371420  T

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