View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10670_low_15 (Length: 250)
Name: NF10670_low_15
Description: NF10670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10670_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 4289991 - 4289752
Alignment:
| Q |
1 |
taagaatctttctgaagctacacaaattcatgatcttttacctaacttgaatatttctcatgatcaagcttctgttttggctcttcaagttaccgtattt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
4289991 |
taagaatctttctgaagctacacaaattcatgatcttttacctaacttgaatatttctcatgatcaagcttctgttttggctcttcaagttaccattttt |
4289892 |
T |
|
| Q |
101 |
ccaaactatggattttcaattggtattacttcacatcatgctgttttagatggtaaaacttcaacttcttttatcaaatcttgggcttacctatgtagaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4289891 |
ccaaactatggattttcaattggtattacttcacatcatgctgttttagatggtaaaacttcaacttcttttatcaaatcttgggcttacctatgtagaa |
4289792 |
T |
|
| Q |
201 |
agcttgaaaataaagtatctgaattagaatcacccctttg |
240 |
Q |
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||||||||||| ||||||||||||||| |||||||||||| |
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| T |
4289791 |
agcttgaaaatgaagtatctgaattagtatcacccctttg |
4289752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 4265732 - 4265971
Alignment:
| Q |
1 |
taagaatctttctgaagctacacaaattcatgatcttttacctaacttgaatatttctcatgatcaagcttctgttttggctcttcaagttaccgtattt |
100 |
Q |
| |
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|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||| |
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| T |
4265732 |
taagaatcttactgaagctaaacaaattcatgatcttttacctaacttgaatatttctcatgatcaagcttctattttggctcttcaagttactcttttt |
4265831 |
T |
|
| Q |
101 |
ccaaactatggattttcaattggtattacttcacatcatgctgttttagatggtaaaacttcaacttcttttatcaaatcttgggcttacctatgtagaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4265832 |
ccaaactatggattttcaattggtattacttcacatcatgctgttttagatggtaaaacttcaacttcttttatcaaatcttgggcttacctatgtagaa |
4265931 |
T |
|
| Q |
201 |
agcttgaaaataaagtatctgaattagaatcacccctttg |
240 |
Q |
| |
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||||||||||| |||||||||||||||||| ||||||||| |
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| T |
4265932 |
agcttgaaaatgaagtatctgaattagaattacccctttg |
4265971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 4260186 - 4260425
Alignment:
| Q |
1 |
taagaatctttctgaagctacacaaattcatgatcttttacctaacttgaatatttctcatgatcaagcttctgttttggctcttcaagttaccgtattt |
100 |
Q |
| |
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|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||| |
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| T |
4260186 |
taagaatctttctgaagctacacagattcatgattttttacctaacttgaatatttctcatgatcaagcttcttttttggctcttcaagttacttttttt |
4260285 |
T |
|
| Q |
101 |
ccaaactatggattttcaattggtattacttcacatcatgctgttttagatggtaaaacttcaacttcttttatcaaatcttgggcttacctatgtagaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4260286 |
ccaaactatggattttcaattggtattacttcacatcatgctgttttagatggtaaaacttcaacttcttttatcaaatcttgggcttacctatgtagaa |
4260385 |
T |
|
| Q |
201 |
agcttgaaaataaagtatctgaattagaatcacccctttg |
240 |
Q |
| |
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||||||||| | ||||||||||||||| || ||||||||| |
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| T |
4260386 |
agcttgaaattgaagtatctgaattagtattacccctttg |
4260425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 4298575 - 4298344
Alignment:
| Q |
1 |
taagaatctttctgaagctacacaaattcatgatcttttacctaacttgaatatttctcatgatcaagcttctgttttggctcttcaagttaccgtattt |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
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| T |
4298575 |
taagaatccttctgaagctacacaaattcatgatcttttacctaacttgaatatttctcatgatcaagcttatgttttggctcttcaagttaccgttttt |
4298476 |
T |
|
| Q |
101 |
ccaaactatggattttcaattggtattacttcacatcatgctgttttagatggtaaaacttcaacttcttttatcaaatcttgggcttacctatgtagaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4298475 |
ccaaactatggattttcaattggtattacttcacatcatgctgttttagatggtaaaacttcaacttcttttatcaaatcttgggcttacctatgtagaa |
4298376 |
T |
|
| Q |
201 |
agcttgaaaataaagtatctgaattagaatca |
232 |
Q |
| |
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| ||| ||| || ||||||||| ||||||| |
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| T |
4298375 |
atattggaaaggaaatatctgaatcagaatca |
4298344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 4285261 - 4285109
Alignment:
| Q |
1 |
taagaatctttctgaagctacacaaattcatgatcttttacctaacttgaatatttctcatgatcaagcttctgttttggctcttcaagttaccgtattt |
100 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| || ||| |
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| T |
4285261 |
taagaatctttcagaagccacacaaattcatgatcttttacctaacttgaatatttcacatgatcaagctactgttttggctcttcaagttactgttttt |
4285162 |
T |
|
| Q |
101 |
ccaaactatggattttcaattggtattacttcacatcatgctgttttagatgg |
153 |
Q |
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|||||||||||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
4285161 |
ccaaactatggattttcaatgggcattacttcacatcatgctgttttagatgg |
4285109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 182 - 239
Target Start/End: Complemental strand, 4285111 - 4285054
Alignment:
| Q |
182 |
tgggcttacctatgtagaaagcttgaaaataaagtatctgaattagaatcaccccttt |
239 |
Q |
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|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
4285111 |
tgggcttacctatgtagaaagcttgaaaatgaagtttctgaattagaatcaccccttt |
4285054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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