View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10670_low_17 (Length: 243)
Name: NF10670_low_17
Description: NF10670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10670_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 4290083 - 4290306
Alignment:
| Q |
1 |
cattaggccaaatgagatgacccaaaagaggataaaagtgataaagtgtaagagaaagggattgtttgagtttgggaagaaggttattgaagaaaagtga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||| |
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| T |
4290083 |
cattaggccaaatgagatgacccaaaagaggataaaagtgagaaagtgtaagagaaagagattgtttgagtttgggaagaagggtatttaagaaaagtga |
4290182 |
T |
|
| Q |
101 |
ggtttggtgtggaaattcatagaagaaaattctttgaacaggtggtaatcttaaccataatatgtcaaagaaagtaagaggaagtgatgtttctgaaggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4290183 |
ggtttggtgtggaaattcatagaagaaaattctttgaacaggtggtaatcttaaccataatatgtcaaagaaagtaagaggaagtgatgtttctgaaggt |
4290282 |
T |
|
| Q |
201 |
agttctacttgtgatgatggtgct |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
4290283 |
agttctacttgtgatgatggtgct |
4290306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 5 - 224
Target Start/End: Complemental strand, 4260090 - 4259871
Alignment:
| Q |
5 |
aggccaaatgagatgacccaaaagaggataaaagtgataaagtgtaagagaaagggattgtttgagtttgggaagaaggttattgaagaaaagtgaggtt |
104 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||| || ||||| |||| ||||||||||||||||||| | |||||||||| ||||||| |
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| T |
4260090 |
aggccaaatgagatgacccaaaagaggataaaagtgagaaagtgcaatggaaagtgattttttgagtttgggaagaagggttttgaagaaaaatgaggtt |
4259991 |
T |
|
| Q |
105 |
tggtgtggaaattcatagaagaaaattctttgaacaggtggtaatcttaaccataatatgtcaaagaaagtaagaggaagtgatgtttctgaaggtagtt |
204 |
Q |
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| T |
4259990 |
tggtgtggaaactcatagaagaaaattctttgaacaggtggtaatcttaaccatagtatgtcaaagaaagtaagaggaagtgatgtttctgaaggtagtt |
4259891 |
T |
|
| Q |
205 |
ctacttgtgatgatggtgct |
224 |
Q |
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|||||||||| ||||||||| |
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| T |
4259890 |
ctacttgtgaagatggtgct |
4259871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 54 - 221
Target Start/End: Original strand, 4293504 - 4293671
Alignment:
| Q |
54 |
gaaagggattgtttgagtttgggaagaaggttattgaagaaaagtgaggtttggtgtggaaattcatagaagaaaattctttgaacaggtggtaatctta |
153 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4293504 |
gaaagggattgtttgagtttgggaagaagggtattgaagaaaagtgaggtttggtgtggaaattcatagaagaaaattctttgaacaggtggtaatctta |
4293603 |
T |
|
| Q |
154 |
accataatatgtcaaagaaagtaagaggaagtgatgtttctgaaggtagttctacttgtgatgatggt |
221 |
Q |
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| T |
4293604 |
accataatatgtcaaagaaagtaagaggaagtgatgtttctgaaggtagttctacttgtgatgatggt |
4293671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 4258385 - 4258572
Alignment:
| Q |
18 |
tgacccaaaagaggataaaagtgataaagtgtaagagaaagggattgtttgagtttgggaagaaggttattgaagaaaagtgaggtttggtgtggaaatt |
117 |
Q |
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|||||||||||| | ||| ||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4258385 |
tgacccaaaagatg-taagagtgagaaagtgtaagagaaagggattgattgagtttgggaagaagggtattgaagaaaagtgaggtttggtgtggaaatt |
4258483 |
T |
|
| Q |
118 |
catagaagaaaattctttgaacaggtggtaatcttaaccataatatgtcaaagaaagtaagaggaagtgatgtttctgaaggtagttct |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
4258484 |
catagaagaaaattctttgaacaggtggtaatcttaaccatagtatgtcaaagaaagtaagaggaagtgatgtttctgaaggaagttct |
4258572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 4265640 - 4265419
Alignment:
| Q |
1 |
cattaggccaaatgagatgacccaaaagaggataaaagtgataaagtgtaagagaaagggattgtttgagtttgggaagaaggttattgaagaaaagtga |
100 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||| | |||||| || ||||| |||| ||||||||||||||||||| | ||| |||||||||| |
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| T |
4265640 |
cattaggccaagtgagatgacccaaaagaggataaaagtaagaaagtgcaatggaaagtgattttttgagtttgggaagaagggtgttgtagaaaagtga |
4265541 |
T |
|
| Q |
101 |
ggtttggtgtggaaattcatagaagaaaattctttgaacaggtggtaatcttaaccataatatgtcaaagaaagtaagaggaagtgatgtttctgaaggt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
4265540 |
ggtttggtgtggaaattcatagaagaaaattctttgaactggtggtaatcttaaccataatatgtccaagaaagtaagaggaagtgatgtttctaaagga |
4265441 |
T |
|
| Q |
201 |
agttctacttgtgatgatggtg |
222 |
Q |
| |
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|||||| | ||||| ||||||| |
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| T |
4265440 |
agttcttcctgtgaagatggtg |
4265419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 54 - 175
Target Start/End: Original strand, 4300185 - 4300306
Alignment:
| Q |
54 |
gaaagggattgtttgagtttgggaagaaggttattgaagaaaagtgaggtttggtgtggaaattcatagaagaaaattctttgaacaggtggtaatctta |
153 |
Q |
| |
|
||||| |||| ||||||||||||||||||| | |||| |||||||| |||||||||||||||||||||||||||| || ||||| | ||||||||||||| |
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| T |
4300185 |
gaaagtgattttttgagtttgggaagaagggtgttgaggaaaagtgtggtttggtgtggaaattcatagaagaaatttttttgacctggtggtaatctta |
4300284 |
T |
|
| Q |
154 |
accataatatgtcaaagaaagt |
175 |
Q |
| |
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|||||| ||||||||||||||| |
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| T |
4300285 |
accatagtatgtcaaagaaagt |
4300306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 169 - 222
Target Start/End: Original strand, 4303509 - 4303562
Alignment:
| Q |
169 |
agaaagtaagaggaagtgatgtttctgaaggtagttctacttgtgatgatggtg |
222 |
Q |
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||||||||||||||||||||||||||||||| |||||| ||||||| ||||||| |
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| T |
4303509 |
agaaagtaagaggaagtgatgtttctgaaggaagttcttcttgtgaagatggtg |
4303562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 4298667 - 4298705
Alignment:
| Q |
1 |
cattaggccaaatgagatgacccaaaagaggataaaagt |
39 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||| |
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| T |
4298667 |
cattaggccaagtgagatgacccaaaagaggataaaagt |
4298705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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