View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10670_low_21 (Length: 238)
Name: NF10670_low_21
Description: NF10670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10670_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 2 - 223
Target Start/End: Original strand, 6751962 - 6752182
Alignment:
| Q |
2 |
ctacagctcaggaaggaacattcatagttgcaaattgatagttaatattgaatcaatcagtgacacaaaaaaggacaatttaacgggaaaaaacaataat |
101 |
Q |
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| T |
6751962 |
ctacagctcaggaaggaacattcatagttgcaaattgatagttaatattgaatc----agtgacacaaaaaaggacaacttaacgggaaaaaacaataat |
6752057 |
T |
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| Q |
102 |
agttggtcccttcggggacatcccgtaaaattgaaacgatacaaagaccaataatgatta---aatacaaatgtattaaaaacacnnnnnnnctacttac |
198 |
Q |
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| T |
6752058 |
aataggtcccttcggggacatcccgtaaaattgaaacgatacaaagaccaataatgattaaataatacaaatgtattacaaacacaaaaaaactacttac |
6752157 |
T |
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| Q |
199 |
aattgatgataaacagcctcttaag |
223 |
Q |
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| T |
6752158 |
aattgatgataaacagcctcttaag |
6752182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 70 - 183
Target Start/End: Original strand, 6760057 - 6760171
Alignment:
| Q |
70 |
aaaaggacaatttaacgggaaaaaa-caataatagttggtcccttcggggacatcccgtaaaattgaaacgatacaaagaccaat-aatgattaaataca |
167 |
Q |
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|||| |||||||||||||||||||| |||||| | | | ||||||| ||||||||| |||||||| ||||||||||| |||||| ||| |||||||| | |
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| T |
6760057 |
aaaatgacaatttaacgggaaaaaaacaataacaatag-tcccttcagggacatccgataaaattggaacgatacaaataccaataaataattaaataaa |
6760155 |
T |
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| Q |
168 |
aatgtattaaaaacac |
183 |
Q |
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||||||| | |||||| |
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| T |
6760156 |
aatgtatcacaaacac |
6760171 |
T |
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