View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10670_low_25 (Length: 227)
Name: NF10670_low_25
Description: NF10670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10670_low_25 |
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| [»] chr1 (5 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 32583350 - 32583124
Alignment:
| Q |
1 |
gtataaaggataccaggacatttttgttcagatgctgagggcacgagatgttctgtcggtcagaaagcatgcagaaccaaaccgtggatcatcatccaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32583350 |
gtataaaggataccaggacatttttgttcagatgctgagggcacgagatgttctgtcggtcagaaagcatgcagaaccaaaccgtggatcatcatccaag |
32583251 |
T |
|
| Q |
101 |
gtatattttcactacacataatgattttatacatgaattttacacattggattttttgtgcgtttcatatcctcaaccagaatgttttcacatgaatggc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32583250 |
gtatattttcactacacataatgattttatacatgaattttacacattggattttttgtgcgtttcatatcctcaaccagaatgttttcacatgaatggc |
32583151 |
T |
|
| Q |
201 |
tagttatctttttattgtatttatgat |
227 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
32583150 |
tagttatctttttattgtatttatgat |
32583124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 32658911 - 32658686
Alignment:
| Q |
1 |
gtataaaggataccaggacatttttgttcagatgctgagggcacgagatgttctgtcggtcagaaagcatgcagaaccaaaccgtggatcatcatccaag |
100 |
Q |
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|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32658911 |
gtataaaggagaccaggacatttttgttcagatgctgcgggcacgagatgttctgtcggtcagaaagcatgcagaaccaaaccgtggatcatcatccaag |
32658812 |
T |
|
| Q |
101 |
gtatattttcactacacataatgattttatacatgaattttacacattggattttttgtgcgtttcatatcctcaaccagaatgttttcacatgaatggc |
200 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
32658811 |
gtatattttcactacacataatgattttatacatg-attttactcattggattttttgtgcgtttcatatcctgaaccagaatgttttcacatgaatggc |
32658713 |
T |
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| Q |
201 |
tagttatctttttattgtatttatgat |
227 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
32658712 |
tagttatctttttattgtatttatgat |
32658686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 13 - 227
Target Start/End: Complemental strand, 32633179 - 32632966
Alignment:
| Q |
13 |
ccaggacatttttgttcagatgctgagggcacgagatgttctgtcggtcagaaagcatgcagaaccaaaccgtggatcatcatccaaggtatattttcac |
112 |
Q |
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|||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32633179 |
ccaggacatttttgttcagaggctaagggcacaagatgttctgtcggtcagaaagcatgcagaaccaaaccgtggatcatcatccaaggtatattttcac |
32633080 |
T |
|
| Q |
113 |
tacacataatgattttatacatgaattttacacattggattttttgtgcgtttcatatcctcaaccagaatgttttcacatgaatggctagttatctttt |
212 |
Q |
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|
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
32633079 |
cacacataatgattttatacatg-attttacacattggattttttgtgcgttttgtatcctgaaccagaatgttttcacatgaatggctagttatgtttt |
32632981 |
T |
|
| Q |
213 |
tattgtatttatgat |
227 |
Q |
| |
|
||||||||||||||| |
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| T |
32632980 |
tattgtatttatgat |
32632966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 32601018 - 32600927
Alignment:
| Q |
1 |
gtataaaggataccaggacatttttgttcagatgctgagggcacgagatgttctgtcggtcagaaagcatgcagaaccaaaccgtggatcat |
92 |
Q |
| |
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|||||||||| |||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
32601018 |
gtataaaggaggccaggacatttttgttcagacgctgagggcatgagatgttgtgtcggtcagaaagcatgcagaaccaaactgtggatcat |
32600927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 165 - 227
Target Start/End: Complemental strand, 32600930 - 32600868
Alignment:
| Q |
165 |
tcatatcctcaaccagaatgttttcacatgaatggctagttatctttttattgtatttatgat |
227 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32600930 |
tcatatcctgaaccagaatgttttcacatgaatggctagttatgtttttattgtatttatgat |
32600868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 13 - 227
Target Start/End: Complemental strand, 26399806 - 26399593
Alignment:
| Q |
13 |
ccaggacatttttgttcagatgctgagggcacgagatgttctgtcggtcagaaagcatgcagaaccaaaccgtggatcatcatccaaggtatattttcac |
112 |
Q |
| |
|
||||||| |||| | |||||||||| ||||| ||||||||||||||||||||||||||||||||||| || |||| |||||||| |||||||| ||||| |
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| T |
26399806 |
ccaggactttttagatcagatgctgtgggcaagagatgttctgtcggtcagaaagcatgcagaaccagacagtgggtcatcatcgaaggtataatttcaa |
26399707 |
T |
|
| Q |
113 |
tacacataatgattttatacatgaattttacacattggattttttgtgcgtttcatatcctcaaccagaatgttttcacatgaatggctagttatctttt |
212 |
Q |
| |
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| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||| |
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| T |
26399706 |
tgcacataatgattttatacatga-ttttacacattggattttttgtgcgtttcatatcctgaaccagaatgttttcgcatgaatgactagttatctttt |
26399608 |
T |
|
| Q |
213 |
tattgtatttatgat |
227 |
Q |
| |
|
||||||||||||||| |
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| T |
26399607 |
tattgtatttatgat |
26399593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 8e-45; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 41165417 - 41165191
Alignment:
| Q |
1 |
gtataaaggataccaggacatttttgttcagatgctgagggcacgagatgttctgtcggtcagaaagcatgcagaaccaaaccgtggatcatcatccaag |
100 |
Q |
| |
|
|||||||||| |||| || ||||||||||||| ||||||||| |||| ||| ||||| | |||||| || ||||||||| |||||||||| || ||| |
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|
| T |
41165417 |
gtataaaggaggccagaacttttttgttcagatactgagggcaagagacgttttgtcgatgagaaagtgcgccgaaccaaacagtggatcatcttcaaag |
41165318 |
T |
|
| Q |
101 |
gtatattttcactacacataatgattttatacatgaattttacacattggattttttgtg-cgtttcatatcctcaaccagaatgttttcacatgaatgg |
199 |
Q |
| |
|
||||| ||||| | ||||||||||||||||||||| ||||| |||||||||| ||||||| | |||||||||| ||||||| |||||||||||||||| |
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|
| T |
41165317 |
gtataatttcaatgcacataatgattttatacatg-attttgcacattggatattttgtgttgattcatatcctgaaccagattgttttcacatgaatga |
41165219 |
T |
|
| Q |
200 |
ctagttatctttttattgtatttatgat |
227 |
Q |
| |
|
||| ||| ||||| |||||||||||||| |
|
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| T |
41165218 |
ctacttaacttttgattgtatttatgat |
41165191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 2 - 227
Target Start/End: Complemental strand, 41149214 - 41149001
Alignment:
| Q |
2 |
tataaaggataccaggacatttttgttcagatgctgagggcacgagatgttctgtcggtcagaaagcatgcagaaccaaaccgtggatcatcatccaagg |
101 |
Q |
| |
|
||||||||| ||| ||| ||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||| ||||| |||| |
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|
| T |
41149214 |
tataaaggaagccatgactttttttttcagatgctgagggcaagagacgttctgtcggtcagaaagcatgcagaaccaaacagtggatcttcatcgaagg |
41149115 |
T |
|
| Q |
102 |
tatattttcactacacataatgattttatacatgaattttacacattggattttttgtg-cgtttcatatcctcaaccagaatgttttcacatgaatggc |
200 |
Q |
| |
|
|||| ||||| | |||||||||||||||| ||||| ||||||||||| | ||||||||||| ||||||| ||||||||||||| |||| |
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|
| T |
41149114 |
tataatttcaatgcacataatgattttat-------------acattagattttttgtgtcatttcatatcctgaaccagattgttttcacatgagtggc |
41149028 |
T |
|
| Q |
201 |
tagttatctttttattgtatttatgat |
227 |
Q |
| |
|
|||||| ||||||||||| ||||||| |
|
|
| T |
41149027 |
tagttaaatttttattgtaattatgat |
41149001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 41175669 - 41175512
Alignment:
| Q |
1 |
gtataaaggataccaggacatttttgttcagatgctgagggcacgagatgttctgtcggtcagaaagcatgcagaaccaaaccgtggatcatcatccaag |
100 |
Q |
| |
|
|||||||||| ||||||| ||||||||||| ||||||||||| | ||||||||||| || |||||||| || ||||||||| |||||||||| ||| || |
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| T |
41175669 |
gtataaaggaggccaggacttttttgttcagttgctgagggcaagggatgttctgtctgtgagaaagcaggctgaaccaaacggtggatcatcttcccag |
41175570 |
T |
|
| Q |
101 |
gtatattttcactacacataatgattttatacatgaattttacacattggattttttgt |
159 |
Q |
| |
|
||||| ||||| | ||| |||| |||||||||| | || |||| ||||||||||||||| |
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|
| T |
41175569 |
gtataatttcaatgcacgtaattattttataca-ggatcttactcattggattttttgt |
41175512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 223
Target Start/End: Complemental strand, 41175491 - 41175461
Alignment:
| Q |
193 |
tgaatggctagttatctttttattgtattta |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
41175491 |
tgaatggctagttatctttttattgtattta |
41175461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 13 - 194
Target Start/End: Original strand, 21014749 - 21014918
Alignment:
| Q |
13 |
ccaggacatttttgttcagatgctgagggcacgagatgttctgtcggtcagaaagcatgcagaaccaaaccgtggatcatcatccaaggtatattttcac |
112 |
Q |
| |
|
||||||| |||| | ||||||| || ||||| ||||||||||||||||||||||||||||||||||| || |||| |||||||| |||||||| ||||| |
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|
| T |
21014749 |
ccaggactttttagatcagatgttgtgggcaagagatgttctgtcggtcagaaagcatgcagaaccagacagtgggtcatcatcgaaggtataatttcaa |
21014848 |
T |
|
| Q |
113 |
tacacataatgattttatacatgaattttacacattggattttttgtgcgtttcatatcctcaaccagaatgttttcacatg |
194 |
Q |
| |
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| ||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
21014849 |
tgcac-----------atacatg-attttacacattggattttttgtgcgtttcatatcctgaaccagaatgttttcgcatg |
21014918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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