View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10670_low_3 (Length: 415)
Name: NF10670_low_3
Description: NF10670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10670_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 33273165 - 33273555
Alignment:
| Q |
1 |
tcttataagatacagcaatcnnnnnnnatcaattaataacaaaaataataaataaagcatagtacttgactcttgcatgaagtaaatttaagagtaattc |
100 |
Q |
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| T |
33273165 |
tcttataagatatagcaatcttttttaattaattaataacaaaaataataaataaagcatagtacttgactcttgcatgaagtaaatttaagagtaattc |
33273264 |
T |
|
| Q |
101 |
tattgtttatccgagtaacgcggtgtgaacaatcattttgattttagctccaagattccagcctgcttattttgtcaaataggcagggttttaaaagaaa |
200 |
Q |
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| T |
33273265 |
tattgtttatccgagtaacgcggtgtgaacaatcattttgattttagctccaagattccagcctgcttattttgtcaaataggcagggttttaaaagaaa |
33273364 |
T |
|
| Q |
201 |
ttaccgtgaccgcaatcaaggtttgtatgtctccgcgactgcaacacaatcatgattgcttaaacacacatttaactgcgattctcagtaatatcgaaga |
300 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
33273365 |
ttaccg------caatcaaggtttgtatgtctccgcgactgcaacacaatcatgattgcataaacacacatttaactgcgattctctgtaatatcgaaga |
33273458 |
T |
|
| Q |
301 |
tagtaatgtacctacaatcagaagcgggaattaaaacctcgatcataggtcaagattttcacactatagattgtaaggaaaacataattaaatctct |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33273459 |
tagtaatgtacctacaatcagaagcgggaattaaaacctcgatcataggtcaagattttcacactatagattgtaaggaaaacataattaaatctct |
33273555 |
T |
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