View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10670_low_6 (Length: 387)
Name: NF10670_low_6
Description: NF10670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10670_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 34327334 - 34327031
Alignment:
| Q |
1 |
tgttcaaatattcccctacaaggatccttccaagttctgaatttaataaaataaaagagagagaaagttctatgatgatgaattatttgttaagtaacat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34327334 |
tgttcaaatattcccctacaaggatccttccaagttctgaatttaataaaataaaagagagagaaagttctatgatgatgaattatttgttaagtaacat |
34327235 |
T |
|
| Q |
101 |
gacattggaaagatatatacataggacattccctacaaatatgtcattgtttgtaaggtaaggtcccattgcccaaaaacacgataccgaaagggtgtat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34327234 |
gacattggaaagatatatacataggacattccctacaaatatgtcattgtttgtaaggtaaggtcccattgcccaaaaacacgataccgaaagggtgtat |
34327135 |
T |
|
| Q |
201 |
gcctttgagagggaaatcatggtgatgaagcatgcaggcctgaacttgttgacatcaacatgggacaacctgttattgctccaagaaatcatttaactaa |
300 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34327134 |
ggctttgagagggaaatcatggtgatgaagcatgcaggcctgaacttgttgacatcaacatgggacaacctgttattgctccaagaaatcatttaactaa |
34327035 |
T |
|
| Q |
301 |
ttca |
304 |
Q |
| |
|
|||| |
|
|
| T |
34327034 |
ttca |
34327031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University