View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10670_low_9 (Length: 370)
Name: NF10670_low_9
Description: NF10670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10670_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 37420415 - 37420056
Alignment:
| Q |
1 |
tccgcacaagtgttttatcacggaggtggatatacatgtggacgtttgtcacaaaactatattttggagataaaccaatctataagttaaagaaaactag |
100 |
Q |
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| T |
37420415 |
tccgcacaagtgttttatcacggaggtggatatacatgtggacgtttgtcacaaaactatattttggagataaaccaatctataagttaaagaaaactag |
37420316 |
T |
|
| Q |
101 |
atttatgaactttgtatgcagggtgttgtttcatctgaatagtgcaagcatcgattcattttctttttatctttcagagcagtatgatccctacattatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37420315 |
atttatgaactttgtatgcagggtgttgtttcatcttaatagtgcaagcatcgattcattttctttttatctttcagagcagtatgatccctacattatc |
37420216 |
T |
|
| Q |
201 |
agtcagtggatatctgttgtttcaaatagaaaagtaaaaaagattcatttacgttcgcttgaagaatgcaacatttcagtttatcccattttcaaatgcc |
300 |
Q |
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| T |
37420215 |
agtcagtggatatctgttgtttcaaatagaaaagtaaaaaagattcatttacgttcgcttgaagaatgcaacatttcagtttatcccattttcaaatgcc |
37420116 |
T |
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| Q |
301 |
agaccttggaggaattggtgctggcgttgggtcattctattgtccaatttccatcctttg |
360 |
Q |
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| T |
37420115 |
agaccttggaggaattggtgctggcgttgggtcattctactgtccgatttccatcctttg |
37420056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 51939719 - 51939668
Alignment:
| Q |
9 |
agtgttttatcacggaggtggatatacatgtggacgtttgtcacaaaactat |
60 |
Q |
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| T |
51939719 |
agtgctttatcacagaggtggaggtacatgtggacgtttgtcacaaaactat |
51939668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 322
Target Start/End: Complemental strand, 51939429 - 51939388
Alignment:
| Q |
281 |
ttatcccattttcaaatgccagaccttggaggaattggtgct |
322 |
Q |
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| T |
51939429 |
ttatccccttttcaaatgtcagtccttggaggaattggtgct |
51939388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 34747487 - 34747430
Alignment:
| Q |
9 |
agtgttttatcacggaggtggatatacatgtggacgtttgtcacaaaactatattttg |
66 |
Q |
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|||||||||||| ||||||||||||| | ||||| ||| ||||||||||| |||||| |
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| T |
34747487 |
agtgttttatcaaagaggtggatatacctatggacatttatcacaaaactagattttg |
34747430 |
T |
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