View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10671_high_11 (Length: 277)

Name: NF10671_high_11
Description: NF10671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10671_high_11
NF10671_high_11
[»] chr5 (2 HSPs)
chr5 (1-258)||(3261550-3261812)
chr5 (42-108)||(747687-747753)
[»] chr4 (2 HSPs)
chr4 (23-73)||(41805179-41805229)
chr4 (21-101)||(11960084-11960164)
[»] chr1 (4 HSPs)
chr1 (24-101)||(20291139-20291216)
chr1 (21-106)||(52282260-52282345)
chr1 (21-89)||(47527934-47528002)
chr1 (36-72)||(20290509-20290545)
[»] chr2 (1 HSPs)
chr2 (21-98)||(26179622-26179699)
[»] chr7 (1 HSPs)
chr7 (16-116)||(24555970-24556070)
[»] chr6 (1 HSPs)
chr6 (21-105)||(9880568-9880652)
[»] chr3 (1 HSPs)
chr3 (20-107)||(47955218-47955305)


Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 3261812 - 3261550
Alignment:
Q  1 tatctatattaagagaattgaagggaggtttttgtctattataaaactagagggggagtttgtgttatttaaaagaactttaagggaggctagtgtaatt 100  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  3261812 tatctatattaagagaatttaagggaggtttttgtctattataaaattagagggggagtttgtgttatttaaaagaacttcaagggaggctagtgtaatt 3261713  T
Q  101 ttccctaatatatttttagttgagtctcacactaaccaacgtgtcgggacaaattttaaaaatttagatactatttataaatgagattgtataaactaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  3261712 ttccctaatatatttttagttgagtctcacactaaccaacgtgtcgggacaaattttaaaaatttagatactatttataaacgagattgtatgaactaat 3261613  T
Q  201 tccttattaattagatca-----agttgggtgttaagataggaatagaaggatgtgatgattt 258  Q
    ||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||    
T  3261612 tccttattaattagatcatcttgagttgggtgttaagataggaatagaaggatgtgatgattt 3261550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 42 - 108
Target Start/End: Original strand, 747687 - 747753
Alignment:
Q  42 taaaactagagggggagtttgtgttatttaaaagaactttaagggaggctagtgtaattttccctaa 108  Q
    ||||||||||||||| ||||||| ||||||||||||||| |||||| |  |||||||||| ||||||    
T  747687 taaaactagagggggtgtttgtgctatttaaaagaacttcaagggaagtcagtgtaatttcccctaa 747753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 41805229 - 41805179
Alignment:
Q  23 gggaggtttttgtctattataaaactagagggggagtttgtgttatttaaa 73  Q
    ||||||||| ||||||||||||||||||||| || ||||||||||||||||    
T  41805229 gggaggtttatgtctattataaaactagaggaggtgtttgtgttatttaaa 41805179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 101
Target Start/End: Complemental strand, 11960164 - 11960084
Alignment:
Q  21 aagggaggtttttgtctattataaaactagagggggagtttgtgttatttaaaagaactttaagggaggctagtgtaattt 101  Q
    ||||||||||| ||| || | ||||||||||||||| ||||||| |||||||   ||| | |||||||| || ||||||||    
T  11960164 aagggaggtttgtgtttagtttaaaactagagggggtgtttgtgctatttaactaaacctcaagggaggttaatgtaattt 11960084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 101
Target Start/End: Complemental strand, 20291216 - 20291139
Alignment:
Q  24 ggaggtttttgtctattataaaactagagggggagtttgtgttatttaaaagaactttaagggaggctagtgtaattt 101  Q
    |||||||  |||||||||||||||||||||||| ||||||||||||||| | ||| | | |||||| |||||| ||||    
T  20291216 ggaggttaatgtctattataaaactagagggggtgtttgtgttatttaagaaaacctcaggggaggttagtgttattt 20291139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 106
Target Start/End: Complemental strand, 52282345 - 52282260
Alignment:
Q  21 aagggaggtttttgtctattataaaactagagggggagtttgtgttatttaaaagaactttaagggaggctagtgtaattttccct 106  Q
    ||||||||||  |||||||||||||||||||| ||  ||||||||| ||| ||  ||| | | |||||| ||||||||||||||||    
T  52282345 aagggaggttaatgtctattataaaactagagaggatgtttgtgttgtttgaacaaacctcaggggaggttagtgtaattttccct 52282260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 47527934 - 47528002
Alignment:
Q  21 aagggaggtttttgtctattataaaactagagggggagtttgtgttatttaaaagaactttaagggagg 89  Q
    ||||||||||  |||||||||||||| ||||||||| ||  |||| |||||||||||||| | ||||||    
T  47527934 aagggaggttaatgtctattataaaattagagggggtgtcagtgtcatttaaaagaacttcaggggagg 47528002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 20290545 - 20290509
Alignment:
Q  36 ctattataaaactagagggggagtttgtgttatttaa 72  Q
    ||||||||||||||||| ||| |||||||||||||||    
T  20290545 ctattataaaactagagagggtgtttgtgttatttaa 20290509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 98
Target Start/End: Original strand, 26179622 - 26179699
Alignment:
Q  21 aagggaggtttttgtctattataaaactagagggggagtttgtgttatttaaaagaactttaagggaggctagtgtaa 98  Q
    ||||||||||| ||| || | ||||||||||||||| ||||||||||||||| | ||| | ||||||||  |||||||    
T  26179622 aagggaggtttgtgtttagtttaaaactagagggggtgtttgtgttatttaagaaaacctcaagggaggtgagtgtaa 26179699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 116
Target Start/End: Original strand, 24555970 - 24556070
Alignment:
Q  16 aattgaagggaggtttttgtctattataaaactagagggggagtttgtgttatttaaaagaactttaagggaggctagtgtaattttccctaatatattt 115  Q
    |||| ||||||||||  |||||||||| ||||||||||||| ||||||||  ||| ||  ||| | | |||||| ||||||||||| |||||  ||||||    
T  24555970 aatttaagggaggttaatgtctattattaaactagagggggtgtttgtgtcgtttgaacaaacctcaggggaggttagtgtaatttcccctagaatattt 24556069  T
Q  116 t 116  Q
    |    
T  24556070 t 24556070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 105
Target Start/End: Complemental strand, 9880652 - 9880568
Alignment:
Q  21 aagggaggtttttgtctattataaaactagagggggagtttgtgttatttaaaagaactttaagggaggctagtgtaattttccc 105  Q
    ||||||||||  |||||||| ||||||||||||||| || | |||||||||||  ||  | ||||||||  ||||||||||||||    
T  9880652 aagggaggttggtgtctattttaaaactagagggggtgtctttgttatttaaagaaaactcaagggaggtgagtgtaattttccc 9880568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 47955305 - 47955218
Alignment:
Q  20 gaagggaggtttttgtctattataaaactagagggggagtttgtgttatttaaaagaactttaagggaggctagtgtaattttcccta 107  Q
    |||||||||||  ||| ||||  |||||||||||||| ||| ||| ||||||| | ||||| ||||||||  |||||||||| |||||    
T  47955305 gaagggaggttaatgtttatttcaaaactagagggggtgttagtgctatttaagaaaacttcaagggaggtgagtgtaatttacccta 47955218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University