View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10671_high_13 (Length: 241)

Name: NF10671_high_13
Description: NF10671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10671_high_13
NF10671_high_13
[»] chr4 (1 HSPs)
chr4 (72-223)||(50754481-50754632)
[»] chr3 (1 HSPs)
chr3 (72-223)||(4321568-4321720)


Alignment Details
Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 72 - 223
Target Start/End: Original strand, 50754481 - 50754632
Alignment:
Q  72 acatgtaatatagcaccaacttgttaacacnnnnnnngaaaatacatttatatctagctctcaaagttctatactatagcatagagtaaaatcaaagatt 171  Q
    ||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50754481 acatgtaatatagcaccaacttgttaacacaaaaaaagaaaatacatttatatctagctctcaaagttctatactatagcatagagtaaaatcaaagatt 50754580  T
Q  172 tagaaccaaacttgatactactctttaccaagagaaacaaatatggtgttgg 223  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  50754581 tagaaccaaacttgatactactctttaccaagagaaacaagtatggtgttgg 50754632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 72 - 223
Target Start/End: Complemental strand, 4321720 - 4321568
Alignment:
Q  72 acatgtaatatagcaccaacttgttaacacnnnnnnn-gaaaatacatttatatctagctctcaaagttctatactatagcatagagtaaaatcaaagat 170  Q
    ||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4321720 acatgtaatatagcaccaacttgttaacacaaaaaaaagaaaatacatttatatctagctctcaaagttctatactatagcatagagtaaaatcaaagat 4321621  T
Q  171 ttagaaccaaacttgatactactctttaccaagagaaacaaatatggtgttgg 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4321620 ttagaaccaaacttgatactactctttaccaagagaaacaaatatggtgttgg 4321568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University