View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10671_high_14 (Length: 240)
Name: NF10671_high_14
Description: NF10671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10671_high_14 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 21 - 223
Target Start/End: Complemental strand, 37189161 - 37188959
Alignment:
| Q |
21 |
ttaacttcatcaaccaaaccacataatgcattcacatattcttgtctctgtcttgaaaccatttccatagtcaatgacttttttggtatacttttgatgc |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
37189161 |
ttaacttcatcaaccaaaccacataatgcattcacatattcttgtctctgtcttgaaaccatttccatagtcaatgacttttttcgtatacttttgatgc |
37189062 |
T |
|
| Q |
121 |
aactttgttattcacatcatcaatatcttcttttaattcctcagctttaccttttcccttcctttgagacacttcttcaatttctttgtttggttcttga |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37189061 |
aactttgttattcacatcatcaatatcttcttttaattcctcagctttaccttttcccttcctttgagacacttcttcaatttctttgtttggttcttga |
37188962 |
T |
|
| Q |
221 |
tgt |
223 |
Q |
| |
|
||| |
|
|
| T |
37188961 |
tgt |
37188959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 21 - 219
Target Start/End: Complemental strand, 37894064 - 37893865
Alignment:
| Q |
21 |
ttaacttcatcaaccaaaccacataatgcattcacatattcttgtctctgtcttgaaaccatttccatagtcaatgacttttttg--gtatacttttgat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||| |
|
|
| T |
37894064 |
ttaacttcatcaaccaaaccacataatgcattcacatattcttgtctctgtcttgaaaccatttccatagtcaatgactttttttcagca-acttttgat |
37893966 |
T |
|
| Q |
119 |
gcaactttgttattcacatcatcaatatcttcttttaattcctcagctttaccttttcccttcctttgagacacttcttcaatttctttgtttggttctt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
37893965 |
gcaactttgttattcacatcatcaatatcttcttttaattcctcagctttaccttttcccttcctttgagacacttcttcaatttctttctttggttctt |
37893866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University