View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10671_high_2 (Length: 427)
Name: NF10671_high_2
Description: NF10671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10671_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 360; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 27 - 419
Target Start/End: Original strand, 6965185 - 6965589
Alignment:
| Q |
27 |
ccatacttccaaatgttggtggatatcttccaatcattgaacaggtatattaatccttgaataataagcgatatcaaggattatatattgtgttactttt |
126 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6965185 |
ccatacttccaaatgttggtggatatcttccaatcattgaacaggtatattaatccttgaataataagcgatatcaaggattatatattgtgttactttt |
6965284 |
T |
|
| Q |
127 |
gagcatgccgtatatattatgtgcaatgtatctttcttatttttagataatttttctaaggacaaaacttaggtacaattgttagcacagcacacgtttt |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6965285 |
gagcatgccgtatatattatgtgcaatgtatctttcttatttttagataatttttctaaggacaaaacttaggtacaattgttagcacagcacacgtttt |
6965384 |
T |
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| Q |
227 |
cttgcattacaagcaacttagagaatatgatttgttgcaactgaatttcattagtgaatgaattatggcataattcattcactaactaactacaata--- |
323 |
Q |
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| T |
6965385 |
cttgcattacaagcaacttagagaatatgatttgttgcaactgaatttcattagtgaatgaattatggcataattcattcactaactaactacaatacta |
6965484 |
T |
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| Q |
324 |
---------ctaatctaggcttatttttcactaactttttattcacattatggattcacaagtcaacaacagtgttatagacgtttgttcctagtattct |
414 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6965485 |
actgtttttctaatctaggcttatttttcactaacttttttttcacattatggattcacaagtcaacaacagtgttatagacgtttgttcctagtattct |
6965584 |
T |
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| Q |
415 |
ctgct |
419 |
Q |
| |
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||||| |
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| T |
6965585 |
ctgct |
6965589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 6955052 - 6955108
Alignment:
| Q |
18 |
caaatggtaccatacttccaaatgttggtggatatcttccaatcattgaacaggtat |
74 |
Q |
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| T |
6955052 |
caaatggtaccatacttcctaatgttggtggatatcttccaattatagaacaggtat |
6955108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 277 - 311
Target Start/End: Complemental strand, 6965469 - 6965435
Alignment:
| Q |
277 |
ttagtgaatgaattatggcataattcattcactaa |
311 |
Q |
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| T |
6965469 |
ttagtgaatgaattatgccataattcattcactaa |
6965435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 49104994 - 49104939
Alignment:
| Q |
18 |
caaatggtaccatacttccaaatgttggtggatatcttccaatcattgaacaggta |
73 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| || || |||||| |
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| T |
49104994 |
caaatggtaccatactcccaaatgttggtggatatcttccaattatagatcaggta |
49104939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 18133683 - 18133629
Alignment:
| Q |
18 |
caaatggtaccatacttccaaatgttggtggatatcttccaatcattgaacaggt |
72 |
Q |
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|||||||||||||||| |||||||||||||||||||| ||||| || |||||||| |
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|
| T |
18133683 |
caaatggtaccatactcccaaatgttggtggatatctaccaattatagaacaggt |
18133629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 49120893 - 49120839
Alignment:
| Q |
18 |
caaatggtaccatacttccaaatgttggtggatatcttccaatcattgaacaggt |
72 |
Q |
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|||||||||||||||| |||||||||||||||||||| ||||| || |||||||| |
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| T |
49120893 |
caaatggtaccatactcccaaatgttggtggatatctaccaattatagaacaggt |
49120839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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