View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10671_high_3 (Length: 407)
Name: NF10671_high_3
Description: NF10671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10671_high_3 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 35560861 - 35560455
Alignment:
| Q |
1 |
cattgcagacacgtgacctggctaattatcaagtaagaaaattattctctgannnnnnnnnnaaagaaaaattattctatgatggtgatgatga-tgttt |
99 |
Q |
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| T |
35560861 |
cattgcagacacgtgacctggctaattctcaagtaagaaaattattctatgattttttttt-aaagaaaaattattctatgatgatgatgatgactgttt |
35560763 |
T |
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| Q |
100 |
ttattttgacaaaattttataatgatgacgatgatccttgcattattaaatttcaaaggccaacctgaaaagaaaaaacaattattcttcaataaaagtc |
199 |
Q |
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| T |
35560762 |
ttattttgacaaaattttataatgatgacgatgatccttgcattattaaatttcaaaggccaacctgaaaagaaaaaacaattattcttcaatagaagtc |
35560663 |
T |
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| Q |
200 |
tctgatagtaaaatgaagatagggctaagatgttttaaaagtaagatgaattaagttttcagcggttcaaactttggaaccatgaacagttgaacaccta |
299 |
Q |
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| T |
35560662 |
tctgatagtaaaatgaagatagggctaagatgttttaaaagtaagatgaattaagttttcagcggttcaaactttggaaccatgaacagttgaacaccta |
35560563 |
T |
|
| Q |
300 |
aatttcaagttttaaagcttagttcagatcagaatgctccactgatttggcataactgcatgaaagtttagttaagaaattaaatgagaaaactaatcac |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35560562 |
aatttcaagttttaaagcttagttcagatcagaatgctccactgatttggcataactgcatgaaagtttagttaagaaattaaatgagaaaactaatcac |
35560463 |
T |
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| Q |
400 |
taaagtga |
407 |
Q |
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|||||||| |
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| T |
35560462 |
taaagtga |
35560455 |
T |
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