View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10671_high_9 (Length: 312)
Name: NF10671_high_9
Description: NF10671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10671_high_9 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 34240109 - 34239797
Alignment:
| Q |
1 |
agaaggagcatgaacaacacagtacttcaccatcctctttcactgtcaaagctcttaagatatcaacttcaacaaccagaagacgtaggttgagttgctc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34240109 |
agaaggagcatgaacaacacagtacttcaccatcctctttcactgtcaaagctcttaagatatcaacttcaacaaccagaagacgtaggttgagttgctc |
34240010 |
T |
|
| Q |
101 |
agcctcggcttcagcatcttccacgcttccctcagctcttctttt-gactgtgatggagtccttgtagatactgaaaaagatggtcaccgcatttctttc |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34240009 |
agcctcggcttcagcatcttccacgcttccctcagctcttctttttgactgtgatggagtccttgtagatactgaaaaagatggtcaccgcatttctttc |
34239910 |
T |
|
| Q |
200 |
aatgatactttccaagaggtgcctcctgctttttaatctttcttttttcacaagtaaatattacttcttattatggttataactattcttaatagaagtc |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34239909 |
aatgatactttccaagaggtgcctcctgctttttaatctttcttttttcacaagtaaatattacttcttattatggttataactattcttaatagaagtc |
34239810 |
T |
|
| Q |
300 |
attgataagataa |
312 |
Q |
| |
|
||||||||||||| |
|
|
| T |
34239809 |
attgataagataa |
34239797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 281 - 309
Target Start/End: Complemental strand, 484020 - 483992
Alignment:
| Q |
281 |
actattcttaatagaagtcattgataaga |
309 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
484020 |
actattcttaatagaagtcattgataaga |
483992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University