View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10671_low_1 (Length: 537)
Name: NF10671_low_1
Description: NF10671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10671_low_1 |
 | |
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| [»] scaffold1325 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 469; Significance: 0; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 1 - 521
Target Start/End: Complemental strand, 44800489 - 44799968
Alignment:
| Q |
1 |
tttattcttaaaatacaaagacaaactctttttatgatgtttttcaccactgctaattgaatatgagaatgaggaagtgtgaagactgaacagaattgag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44800489 |
tttattcttaaaatacaaagacaaactctttttatgatgtttttcaccactgctaattgaatatgagaatgaggaagtgtgaagactgaacagaattgag |
44800390 |
T |
|
| Q |
101 |
agaatgaatgttcttctgagttcattcatcattcattgaaacttcttatacatagcatctacacagactacactatctcactgccccactaagctaacgg |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
44800389 |
agaatgaatgttcttctgagttcattcatcattcattgaaacttcttatacatagcatctatacagactacactatctcactgccccactaagctaacgg |
44800290 |
T |
|
| Q |
201 |
taatgtatcattcactaaaataacagaaagtgaatgagtaatactactcctttcaattttttacatgctttgttgttatctgtgatatcaaattgataat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44800289 |
taatgtatcattcactaaaataacagaaagtgaatgagtaatactactcctttcaattttttacatgctttgttgttatctgtgatatcaaattgataat |
44800190 |
T |
|
| Q |
301 |
tagaggaatatgatattcttttcctgg-nnnnnnnattaaatttgtgtgatgaagatatcacaaaaatagttctttctttgtttaatcccctatggctta |
399 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
44800189 |
tagaggaatatgatattcttttcctggttttttttattaaatttgtgtgatgaagatatcacaaaaatagttctttctttgtttaattccctatggctta |
44800090 |
T |
|
| Q |
400 |
tgcaatggtaggaggagattgtgattgataacaaggttctacgagtaggaaataccatagctgttataagcgtagagttcaggaagaaaaagacgggcca |
499 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
44800089 |
tgcaatggtaggaggagattgagattgataacaaggttctacgagtaggaaatgctatagctgttgtaagcgtagagttcaggaagaaaaagacgggcca |
44799990 |
T |
|
| Q |
500 |
aatttttgctcaagggcgtcat |
521 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
44799989 |
aatttttgctcaagggcgtcat |
44799968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 377 - 519
Target Start/End: Complemental strand, 44803960 - 44803819
Alignment:
| Q |
377 |
tttgtttaatcccctatggcttatgcaatggtaggaggagattgtgattgataacaaggttctacgagtaggaaataccatagctgttataagcgtagag |
476 |
Q |
| |
|
|||||||||| |||| | ||||||||| |||||||||||||||| ||||||| | |||||||||||||||||| || |||||||| ||||||| ||| |
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|
| T |
44803960 |
tttgtttaattccctgttgcttatgca-tggtaggaggagattgagattgatgctagggttctacgagtaggaaaggccgtagctgttgtaagcgtggag |
44803862 |
T |
|
| Q |
477 |
ttcaggaagaaaaagacgggccaaatttttgctcaagggcgtc |
519 |
Q |
| |
|
|| |||||||||||||||| |||| |||||||||||||||||| |
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|
| T |
44803861 |
ttgaggaagaaaaagacggaccaagtttttgctcaagggcgtc |
44803819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 392 - 521
Target Start/End: Complemental strand, 44786777 - 44786648
Alignment:
| Q |
392 |
atggcttatgcaatggtaggaggagattgtgattgataacaaggttctacgagtaggaaataccatagctgttataagcgtagagttcaggaagaaaaag |
491 |
Q |
| |
|
|||||||||| ||| ||||||||||||| ||| ||| || || |||||||||||||| || ||||||||||||||||| ||||| ||||||||||| |
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|
| T |
44786777 |
atggcttatgtgatgataggaggagattgagatcgatggcagagtcctacgagtaggaaagactatagctgttataagcgtggagttaaggaagaaaaaa |
44786678 |
T |
|
| Q |
492 |
acgggccaaatttttgctcaagggcgtcat |
521 |
Q |
| |
|
|| ||||||||||||||||| ||||||||| |
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|
| T |
44786677 |
actggccaaatttttgctcaggggcgtcat |
44786648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 408 - 521
Target Start/End: Complemental strand, 44797022 - 44796909
Alignment:
| Q |
408 |
taggaggagattgtgattgataacaaggttctacgagtaggaaataccatagctgttataagcgtagagttcaggaagaaaaagacgggccaaatttttg |
507 |
Q |
| |
|
||||||||||||| |||||||| || ||||||| || ||||||| | |||||||| ||||||| ||||| ||||||||||| || |||||| |||||| |
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|
| T |
44797022 |
taggaggagattgagattgataccagggttctaagactaggaaaggctgtagctgttctaagcgtggagttgaggaagaaaaaaactggccaagtttttg |
44796923 |
T |
|
| Q |
508 |
ctcaagggcgtcat |
521 |
Q |
| |
|
|||||||||||||| |
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|
| T |
44796922 |
ctcaagggcgtcat |
44796909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 388 - 521
Target Start/End: Complemental strand, 44788459 - 44788326
Alignment:
| Q |
388 |
ccctatggcttatgcaatggtaggaggagattgtgattgataacaaggttctacgagtaggaaataccatagctgttataagcgtagagttcaggaagaa |
487 |
Q |
| |
|
||||||| ||| || ||| |||||||||||||| ||| ||| || |||||||||| ||| || || |||||| ||||||| |||||||||||||| |
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|
| T |
44788459 |
ccctatgacttgtgtaattgtaggaggagattgagatcgatgctaaagttctacgagcagggaagggtatggctgttgtaagcgtggagttcaggaagaa |
44788360 |
T |
|
| Q |
488 |
aaagacgggccaaatttttgctcaagggcgtcat |
521 |
Q |
| |
|
|||||| ||||||||||||||||| || |||||| |
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|
| T |
44788359 |
aaagactggccaaatttttgctcagggacgtcat |
44788326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 457 - 521
Target Start/End: Complemental strand, 44792078 - 44792014
Alignment:
| Q |
457 |
tagctgttataagcgtagagttcaggaagaaaaagacgggccaaatttttgctcaagggcgtcat |
521 |
Q |
| |
|
|||||||| ||||||| ||||||| |||||||||||| || ||| |||||||||||||||||||| |
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|
| T |
44792078 |
tagctgttgtaagcgtggagttcaagaagaaaaagactggacaagtttttgctcaagggcgtcat |
44792014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 434 - 521
Target Start/End: Complemental strand, 44783782 - 44783695
Alignment:
| Q |
434 |
ggttctacgagtaggaaataccatagctgttataagcgtagagttcaggaagaaaaagacgggccaaatttttgctcaagggcgtcat |
521 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||| | ||||| |||||||||||||| |||||| |||||||||| || |||||| |
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|
| T |
44783782 |
ggttctacgagtaggaaaggttatagctgttgtaagcatggagtttaggaagaaaaagactggccaagtttttgctcatggacgtcat |
44783695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 152
Target Start/End: Complemental strand, 44804263 - 44804169
Alignment:
| Q |
57 |
ttgaatatgagaatgaggaagtgtgaagactgaacagaattgagagaatgaatgttcttctgagttcattcatcattcattgaaacttcttataca |
152 |
Q |
| |
|
|||||||||| | |||||||||||||||| |||||| ||||| |||||||| |||||||||||| |||| ||||| ||||||| ||| |||||| |
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|
| T |
44804263 |
ttgaatatgatagtgaggaagtgtgaaga-tgaacataattggcagaatgaaggttcttctgagtccattggtcatttattgaaaattcatataca |
44804169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 267
Target Start/End: Complemental strand, 44797144 - 44797103
Alignment:
| Q |
226 |
gaaagtgaatgagtaatactactcctttcaattttttacatg |
267 |
Q |
| |
|
|||||| ||||| |||||| |||||||||||||||||||||| |
|
|
| T |
44797144 |
gaaagtaaatgaataataccactcctttcaattttttacatg |
44797103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 267
Target Start/End: Complemental strand, 44804111 - 44804070
Alignment:
| Q |
226 |
gaaagtgaatgagtaatactactcctttcaattttttacatg |
267 |
Q |
| |
|
|||||| ||||| |||||||||||||||||| |||||||||| |
|
|
| T |
44804111 |
gaaagtaaatgaataatactactcctttcaactttttacatg |
44804070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1325 (Bit Score: 91; Significance: 8e-44; HSPs: 1)
Name: scaffold1325
Description:
Target: scaffold1325; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 281 - 451
Target Start/End: Original strand, 1825 - 1996
Alignment:
| Q |
281 |
tgtgatatcaaattgataattagaggaatatgatattcttttcctggnnnnnnn-attaaatttgtgtgatgaagatatcacaaaaatagttctttcttt |
379 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||| || |||||| ||| ||| |
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|
| T |
1825 |
tgtgatatcaaattgataattagaggaatgggatattcttttcccggttttttgtattaaatttgtgtgatgaagatatcacgaacatagttattttttt |
1924 |
T |
|
| Q |
380 |
gtttaatcccctatggcttatgcaatggtaggaggagattgtgattgataacaaggttctacgagtaggaaa |
451 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||| |||||||| |||||||||| |||||||||| |
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|
| T |
1925 |
gtttaattccctatggcttatgtaatggtaggaggagattcagattgataccaaggttctatgagtaggaaa |
1996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 29 - 101
Target Start/End: Original strand, 11570911 - 11570983
Alignment:
| Q |
29 |
tttttatgatgtttttcaccactgctaattgaatatgagaatgaggaagtgtgaagactgaacagaattgaga |
101 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11570911 |
tttttatgatgttaatcaccactgctaattgaatatgagaatgaggaagtgtgaagactgaacagaattgaga |
11570983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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