View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10671_low_10 (Length: 393)
Name: NF10671_low_10
Description: NF10671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10671_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 19 - 383
Target Start/End: Complemental strand, 6104834 - 6104470
Alignment:
| Q |
19 |
atgttaagatctgagttctgtctaaatacatctttgagatataaagtaaacgaggtaagataccacaaacttgttcttagtgaatgttattttctacagt |
118 |
Q |
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| T |
6104834 |
atgttaagatctgagttctgtctaaatacatctttgagatataaagtaaacgaggtaagataccacaaacttgttcttagtgaatgttattttctacagt |
6104735 |
T |
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| Q |
119 |
agaaatcattatgatttggttcaaatccattttagagtaatagtgcagtttccttagtagttagtagtatatatagtttctgcatttgtgatatatgcaa |
218 |
Q |
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| T |
6104734 |
agaaatcattatgatttggttcaagtccattttagagtaatagtgcagtttctttagtagttagtagtatatatagtttctgcatttgtgatatatgcaa |
6104635 |
T |
|
| Q |
219 |
tctatatagtttgcggagtagtatagcttgtacattagtcttttattaaagaaggaggttatgtctataaatagtttaatgtactcagttatggtagatt |
318 |
Q |
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|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
6104634 |
tctatatagtttgcggagtagtatagcttgtaaatttgtcttttattaaagaaggaggttatgtctataaatagtttaatgtactcagttatagtagatt |
6104535 |
T |
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| Q |
319 |
tgtcctctgtttacattttaatgccctcccttcaggtttttggttcattatttgcccttcctatg |
383 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6104534 |
tgtcctctgtttacattttaatgccctcccttcaggtttttggttcattatttgcccttcctatg |
6104470 |
T |
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