View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10671_low_11 (Length: 389)
Name: NF10671_low_11
Description: NF10671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10671_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 10 - 370
Target Start/End: Original strand, 40646671 - 40647031
Alignment:
| Q |
10 |
acatcatcattttccgacaacccttcaacctcatacgccggttcaaccggattccatctctcaaccgatacatcaatctcaagcagaacatccttaacct |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40646671 |
acatcatcattttccgacaacccttcaacctcatacgccggttcaaccggattccatctctcaaccgatacatcaatctcaagcagaacatccttaacct |
40646770 |
T |
|
| Q |
110 |
ctcttcgcaactcactcccagaaaacccaaacatctacgacttctccgaaatctgttccgccacaaacaacttcctctccaaacgctactcttcctcaac |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
40646771 |
ctcttcgcaactcactcccagaaaacccaaacatctacgacttctccgaaatctgttccgccacaaataacttcctctccaaacgctactcttcctcaac |
40646870 |
T |
|
| Q |
210 |
accatgttggcgttgcaccttgcgtaactctgacgtcatcatcttccaacgcaaattccgtcgcaaactccaaacccaacagctgcaagagcttctttcc |
309 |
Q |
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|||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40646871 |
accatgctggcgttgcaccttacgtaactctgacgtcatcatcttccaacgcaaattccgtcgcaaactccaaacccaacagctgcaagagcttctttcc |
40646970 |
T |
|
| Q |
310 |
accatctgtcgcagccaccacgtcagcatcgtgaaactcctcggcgtttcgatctccggtg |
370 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40646971 |
accatctgtcgcagccaccacgtcagcatcgtgaaactcctcggcgtttcgatctccggtg |
40647031 |
T |
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